Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 2.4e-41 171.8 91 100.0
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 2.1e-37 158.7 87 94.3
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 2.1e-37 158.7 87 94.3
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 5.8e-35 150.6 80 97.5
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 1.4e-33 146.0 80 92.5
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 5.5e-33 144.1 80 93.8
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 5.5e-33 144.1 79 93.7
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 9.3e-33 143.3 80 91.2
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 1.6e-32 142.5 80 91.2
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 2.7e-32 141.7 80 91.2
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 2.7e-32 141.7 80 90.0
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 3.5e-32 141.4 80 92.5
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 6.0e-32 140.6 87 83.9
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 7.9e-32 140.2 80 92.5
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 7.9e-32 140.2 80 88.8
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 1.0e-31 139.8 80 88.8
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 1.0e-31 139.8 80 90.0
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 1.3e-31 139.4 80 90.0
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 2.3e-31 138.7 80 91.2
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 3.0e-31 138.3 87 81.6
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 1.1e-30 136.3 80 87.5
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.5e-30 135.2 80 87.5
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 3.3e-30 134.8 80 90.0
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 4.3e-30 134.4 87 81.6
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 4.3e-30 134.4 80 86.2
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 4.3e-30 134.4 87 81.6
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 4.3e-30 134.4 78 85.9
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 5.6e-30 134.0 82 85.4
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 7.4e-30 133.7 80 85.0
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 7.4e-30 133.7 80 83.8
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 7.4e-30 133.7 74 91.9
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 2.1e-29 132.1 80 81.2
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 2.1e-29 132.1 81 84.0
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 2.1e-29 132.1 79 87.3
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 2.8e-29 131.7 75 89.3
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 2.8e-29 131.7 75 89.3
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 3.7e-29 131.3 80 82.5
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 4.8e-29 131.0 75 88.0
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 4.8e-29 131.0 80 85.0
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 6.2e-29 130.6 81 85.2
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 6.2e-29 130.6 80 82.5
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 8.2e-29 130.2 76 86.8
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 8.2e-29 130.2 76 86.8
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 8.2e-29 130.2 80 81.2
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 2.4e-28 128.6 81 82.7
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 2.4e-28 128.6 81 82.7
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 2.4e-28 128.6 80 83.8
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 3.1e-28 128.3 81 84.0
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 3.1e-28 128.3 81 82.7
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 3.1e-28 128.3 83 83.1
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 3.1e-28 128.3 81 82.7
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 5.3e-28 127.5 80 80.0
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 5.3e-28 127.5 80 77.5
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 5.3e-28 127.5 80 82.5
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 5.3e-28 127.5 80 82.5
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 6.9e-28 127.1 81 82.7
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 6.9e-28 127.1 81 81.5
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.9e-28 127.1 80 82.5
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.9e-28 127.1 80 82.5
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 6.9e-28 127.1 81 82.7
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 6.9e-28 127.1 80 82.5
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 9.0e-28 126.7 81 81.5
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 1.2e-27 126.3 80 76.2
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 1.5e-27 125.9 80 81.2
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 4.5e-27 124.4 81 81.5
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 5.8e-27 124.0 82 80.5
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 1.7e-26 122.5 80 77.5
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 1.7e-26 122.5 73 86.3
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 2.2e-26 122.1 81 79.0
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 3.8e-26 121.3 75 82.7
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 2.5e-25 118.6 80 76.2
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 2.5e-25 118.6 78 78.2
Gorai.007G317400 Gossypium raimondii HOM05D007446 ORTHO05D009376 9.3e-25 116.7 80 81.2
Gohir.A11G174000 Gossypium hirsutum HOM05D007446 ORTHO05D009376 2.7e-24 115.2 62 95.2
Gohir.D11G294266 Gossypium hirsutum HOM05D007446 ORTHO05D009376 3.5e-24 114.8 82 78.0
MELO3C007921.2 Cucumis melo HOM05D007446 ORTHO05D009376 6.0e-24 114.0 63 90.5
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 1.0e-23 113.2 81 75.3
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 3.0e-23 111.7 72 76.4
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 3.9e-23 111.3 79 72.2
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 6.7e-23 110.5 72 77.8
TPR.G25793 Trifolium pratense HOM05D000002 ORTHO05D000001 6.7e-23 110.5 88 70.5
Sed0007439 Sechium edule HOM05D007446 ORTHO05D009376 8.7e-23 110.2 63 87.3
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 1.5e-22 109.4 81 71.6
Psat4g101880 Pisum sativum HOM05D007446 ORTHO05D009376 3.3e-22 108.2 80 68.8
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 7.4e-22 107.1 78 70.5
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 7.4e-22 107.1 78 75.6
Medtr8g075290 Medicago truncatula HOM05D007446 ORTHO05D009376 9.7e-22 106.7 81 69.1
Psat4g101720 Pisum sativum HOM05D007446 ORTHO05D009376 3.7e-21 104.8 80 67.5
Nitab4.5_0001658g0040 Nicotiana tabacum HOM05D007446 ORTHO05D009376 4.1e-20 101.3 63 81.0
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 9.0e-20 100.1 75 72.0
Nitab4.5_0001892g0060 Nicotiana tabacum HOM05D007446 ORTHO05D009376 2.6e-19 98.6 63 79.4
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 1.7e-18 95.9 75 72.0
MD15G1243200 Malus domestica HOM05D007446 ORTHO05D009376 2.2e-18 95.5 62 79.0
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 2.2e-18 95.5 74 68.9
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 3.8e-18 94.7 75 66.7
Oeu007438.1 Olea europaea HOM05D007446 ORTHO05D009376 3.8e-18 94.7 55 87.3
Oeu054756.1 Olea europaea HOM05D007446 ORTHO05D009376 1.9e-17 92.4 55 85.5
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 3.2e-17 91.7 75 70.7
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 2.7e-16 88.6 76 59.2
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 5.1e-15 84.3 51 78.4
PGSC0003DMG400022557 Solanum tuberosum HOM05D007446 ORTHO05D009376 1.9e-14 82.4 59 74.6
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 3.3e-14 81.6 52 76.9
Psat0s2733g0120 Pisum sativum HOM05D007446 ORTHO05D009376 3.4e-11 71.6 64 57.8
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 4.5e-11 71.2 86 48.8
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 6.5e-10 67.4 83 44.6
Zm00001eb428230 Zea mays HOM05D007446 ORTHO05D009376 1.1e-09 66.6 55 67.3
Actinidia22956 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.4e-09 66.2 79 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 2.3e-07 58.9 64 43.8
TAR369G0162 Trochodendron aralioides HOM05D002795 ORTHO05D000638 1.1e-06 56.6 89 41.6


User provided reference genes

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