Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 7.5e-112 407.1 197 100.0
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 3.8e-108 394.8 197 97.5
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.8e-102 375.9 197 89.8
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 7.0e-102 374.0 197 89.3
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.5e-99 366.3 192 90.1
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 3.3e-99 365.2 192 89.6
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 5.6e-99 364.4 197 88.3
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 3.6e-98 361.7 193 88.6
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 2.0e-96 355.9 192 87.5
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.2e-93 346.7 192 85.4
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 6.0e-93 344.4 192 83.9
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.1e-91 340.1 194 83.0
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.9e-91 339.3 194 83.0
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 3.3e-91 338.6 194 82.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 3.6e-90 335.1 195 82.6
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.0e-90 334.0 195 82.1
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.1e-89 333.6 195 81.5
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.8e-89 332.8 192 80.7
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.3e-89 332.4 192 82.8
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.1e-89 332.0 195 82.1
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 6.8e-89 330.9 192 80.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 8.9e-89 330.5 192 81.2
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 8.9e-89 330.5 192 79.7
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.2e-88 330.1 195 81.0
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.5e-88 329.7 210 76.7
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.5e-88 329.7 192 81.2
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.4e-88 328.6 194 80.9
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.4e-88 328.2 196 81.1
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 5.8e-88 327.8 195 81.0
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.3e-87 326.6 194 80.9
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.7e-87 326.2 192 80.2
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 2.9e-87 325.5 192 80.7
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.9e-87 325.5 194 80.9
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 4.9e-87 324.7 194 80.9
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 6.4e-87 324.3 192 80.2
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 6.4e-87 324.3 195 77.9
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.4e-86 323.2 194 80.9
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 2.4e-86 322.4 192 79.7
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.4e-86 322.4 194 80.4
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 9.2e-86 320.5 194 80.9
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.1e-85 319.3 192 78.1
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.7e-85 318.9 194 79.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 3.5e-85 318.5 192 78.6
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.6e-85 318.2 194 78.4
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 4.6e-85 318.2 194 80.4
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 6.0e-85 317.8 194 79.9
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 6.0e-85 317.8 196 80.1
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.0e-84 317.0 193 79.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.0e-84 317.0 192 75.5
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.0e-84 315.5 193 78.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.9e-84 315.1 193 79.8
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 3.9e-84 315.1 194 76.8
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 5.1e-84 314.7 194 77.3
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.1e-83 313.5 193 79.3
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.1e-83 313.5 194 79.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.5e-83 313.2 194 76.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-83 312.8 192 76.0
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.3e-83 312.0 194 80.4
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 3.3e-83 312.0 195 74.9
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 3.3e-83 312.0 193 76.2
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 5.6e-83 311.2 195 74.4
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 7.3e-83 310.8 194 78.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.2e-82 310.1 195 73.8
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.1e-82 309.3 193 77.2
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.8e-82 308.9 194 78.4
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 3.6e-82 308.5 192 76.0
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 6.2e-82 307.8 193 75.1
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 1.4e-81 306.6 193 75.1
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.3e-81 305.8 192 77.1
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.3e-81 305.8 192 77.1
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.3e-81 305.8 192 77.6
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 3.1e-81 305.4 193 75.6
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 3.1e-81 305.4 193 75.6
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 4.0e-81 305.1 192 74.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.0e-81 305.1 194 75.8
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-80 303.5 192 76.6
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-80 303.5 192 74.5
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.5e-80 303.1 184 77.7
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 4.4e-80 301.6 192 76.6
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 4.4e-80 301.6 193 75.1
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 5.8e-80 301.2 192 75.5
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 7.5e-80 300.8 193 74.1
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 9.9e-80 300.4 193 74.1
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.3e-79 300.1 194 74.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 3.7e-79 298.5 193 75.6
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.9e-78 296.2 194 72.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.4e-78 295.8 194 74.2
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 3.2e-78 295.4 192 73.4
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 5.4e-78 294.7 202 70.8
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 5.4e-78 294.7 195 71.8
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 9.2e-78 293.9 192 74.5
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 9.2e-78 293.9 192 74.5
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.5e-77 292.0 194 72.7
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 6.0e-77 291.2 179 78.2
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 6.0e-77 291.2 194 74.2
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 3.0e-76 288.9 195 74.4
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.9e-76 288.5 192 72.4
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.6e-76 287.3 170 78.8
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.1e-74 282.7 181 75.7
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.6e-74 282.0 201 69.2
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 6.2e-74 281.2 239 61.1
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 3.4e-72 275.4 194 68.6
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 5.8e-72 274.6 194 70.1
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 5.8e-72 274.6 194 70.1
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 3.8e-71 271.9 178 73.6
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-70 270.4 193 69.9
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-70 270.4 193 69.9
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 4.2e-70 268.5 194 66.0
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.2e-69 266.9 193 65.8
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.1e-67 260.4 228 59.6
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.5e-67 260.0 171 75.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.9e-67 259.6 171 73.1
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.9e-67 259.6 192 64.1
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.5e-67 259.2 197 62.9
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 5.6e-67 258.1 195 66.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 5.6e-67 258.1 195 66.2
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 5.6e-67 258.1 195 66.2
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.1e-66 256.1 184 69.0
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.8e-65 253.1 193 61.7
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.0e-64 249.6 195 66.2
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 2.2e-63 246.1 193 64.2
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.9e-62 243.0 192 60.9
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.7e-60 236.5 193 61.1
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 3.9e-60 235.3 193 57.5
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.4e-57 226.9 171 67.8
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 6.9e-57 224.6 137 76.6
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.2e-56 223.8 200 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 6.2e-50 201.4 196 53.6
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.8e-49 199.9 185 57.3
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 4.0e-49 198.7 132 72.0
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.0e-48 196.4 195 49.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.7e-47 193.4 173 55.5
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.2e-45 187.2 169 60.4
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 4.6e-45 185.3 175 54.3
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 5.7e-43 178.3 93 88.2
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.3e-36 157.1 141 56.7
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.8e-36 156.8 193 46.1
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.2e-32 144.1 100 71.0
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.4e-32 142.5 84 84.5
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.3e-31 140.6 139 54.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 6.5e-31 138.3 197 37.6
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 2.5e-30 136.3 223 35.9
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.1e-29 133.3 84 72.6
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 9.1e-25 117.9 69 82.6
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 8.5e-23 111.3 93 57.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.0e-20 104.4 197 34.5
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-20 103.6 143 42.0
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 8.2e-10 68.2 135 40.7
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 3.8e-07 59.3 210 24.8


User provided reference genes

Program Settings