Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.3e-87 326.2 268 100.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 2.2e-82 309.7 268 96.3
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 2.1e-80 303.1 268 94.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.3e-79 300.4 268 94.4
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 8.7e-79 297.7 268 84.0
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.5e-78 297.0 268 93.7
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.5e-78 297.0 268 93.7
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.8e-77 292.0 268 93.3
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.9e-76 288.1 269 92.6
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.9e-76 288.1 269 92.6
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.8e-75 285.0 267 92.5
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 3.8e-74 282.3 266 91.0
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 5.5e-73 278.5 266 91.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.1e-73 278.1 266 90.6
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.0e-71 274.2 267 88.0
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 2.1e-69 266.5 266 85.7
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.7e-69 265.8 266 88.7
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.7e-69 265.8 266 87.2
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 6.2e-69 265.0 266 86.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 8.2e-69 264.6 266 88.0
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.1e-68 264.2 266 88.0
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.1e-68 262.7 266 86.1
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.0e-68 262.3 267 87.3
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 5.3e-68 261.9 269 86.6
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.3e-68 261.9 252 90.9
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 5.3e-68 261.9 266 87.6
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 2.0e-67 260.0 265 87.5
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.0e-67 260.0 265 87.5
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 3.4e-67 259.2 266 82.7
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 3.4e-67 259.2 266 85.0
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.8e-67 258.5 265 86.8
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 5.8e-67 258.5 264 87.1
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.0e-66 257.7 265 85.7
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.0e-66 257.7 266 85.7
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.9e-66 256.1 265 85.3
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.9e-66 256.1 266 84.2
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.8e-66 255.8 266 85.7
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 4.9e-66 255.4 266 84.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.4e-65 253.8 266 83.8
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.5e-65 253.1 266 84.6
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 5.5e-65 251.9 265 84.5
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 5.5e-65 251.9 268 84.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 5.5e-65 251.9 268 84.0
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 9.3e-65 251.1 266 85.0
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 3.5e-64 249.2 267 83.5
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 3.5e-64 249.2 253 87.0
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 6.0e-64 248.4 267 85.0
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 6.0e-64 248.4 267 85.0
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.0e-63 247.7 268 82.8
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 6.7e-63 245.0 264 84.1
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.5e-62 243.8 265 82.3
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.5e-62 243.0 268 82.1
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 9.7e-62 241.1 263 85.2
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 2.2e-61 240.0 266 84.6
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.8e-61 239.6 267 82.8
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.7e-61 239.2 267 82.4
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 4.8e-61 238.8 267 81.6
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.4e-60 237.3 266 82.3
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.4e-60 236.5 267 82.4
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.4e-60 236.5 267 82.4
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.1e-60 236.1 266 81.2
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 3.1e-60 236.1 263 82.9
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.3e-60 235.3 268 81.0
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.2e-59 234.2 266 81.2
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 2.0e-59 233.4 267 81.6
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 3.4e-59 232.6 267 76.4
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 3.4e-59 232.6 264 81.8
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 4.5e-59 232.3 268 80.2
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 4.5e-59 232.3 267 81.6
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 5.9e-59 231.9 270 81.5
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 5.9e-59 231.9 267 81.3
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 7.7e-59 231.5 252 82.5
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 7.7e-59 231.5 268 82.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 7.7e-59 231.5 268 82.1
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 7.7e-59 231.5 268 82.1
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 7.7e-59 231.5 268 82.1
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 7.7e-59 231.5 269 81.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 1.0e-58 231.1 268 81.7
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.0e-58 231.1 267 80.5
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-58 231.1 276 50.7
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.3e-58 230.7 267 82.4
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.2e-58 229.9 267 81.3
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 2.2e-58 229.9 267 78.3
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.9e-58 229.6 267 82.4
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.9e-58 229.6 243 87.2
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 3.8e-58 229.2 267 80.9
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 3.8e-58 229.2 272 79.0
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 6.5e-58 228.4 269 81.0
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 6.5e-58 228.4 267 80.9
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.4e-57 227.3 268 80.2
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 2.5e-57 226.5 263 79.8
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 3.2e-57 226.1 266 80.5
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 4.2e-57 225.7 250 83.2
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.2e-57 225.7 265 81.1
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.5e-57 225.3 267 80.5
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 5.5e-57 225.3 268 82.1
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 7.2e-57 224.9 266 81.2
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 9.4e-57 224.6 270 80.4
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 9.4e-57 224.6 264 76.9
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.2e-56 224.2 268 79.1
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-56 223.4 267 80.9
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.1e-56 223.4 268 78.7
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.7e-56 223.0 268 77.2
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 80.9
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 80.9
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 4.6e-56 222.2 266 80.8
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 4.6e-56 222.2 240 86.7
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 4.6e-56 222.2 267 80.1
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.0e-55 221.1 267 79.0
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.8e-55 220.3 264 73.9
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 2.3e-55 219.9 266 80.8
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.0e-54 216.9 256 81.2
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 4.3e-54 215.7 267 75.3
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 4.3e-54 215.7 267 75.3
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 5.7e-54 215.3 229 90.4
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 7.4e-54 214.9 253 80.6
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.7e-54 214.5 271 52.4
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.3e-53 214.2 267 78.3
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 8.2e-53 211.5 267 79.0
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.1e-52 209.1 234 87.6
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 9.1e-52 208.0 266 77.4
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 9.1e-52 208.0 268 75.4
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.2e-51 207.6 265 75.5
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.5e-51 207.2 228 88.2
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.5e-51 207.2 256 79.7
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 5.9e-51 205.3 267 76.8
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.2e-50 203.4 263 76.4
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.9e-49 200.3 266 76.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 4.2e-49 199.1 229 86.9
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 3.6e-48 196.1 264 70.8
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 3.0e-47 193.0 267 76.0
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 6.7e-47 191.8 268 75.0
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.6e-46 189.9 227 86.3
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 9.7e-46 188.0 229 84.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.3e-45 187.6 267 67.0
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.4e-44 183.3 262 73.3
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.1e-41 174.5 259 70.7
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 4.2e-41 172.6 263 70.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.2e-40 171.0 265 70.2
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.1e-40 170.2 267 59.2
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 1.0e-39 167.9 212 84.9
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 5.2e-39 165.6 208 87.5
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-38 164.1 237 77.6
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.4e-36 156.8 91 82.4
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.1e-33 147.9 83 84.3
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.2e-30 137.9 95 71.6
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.0e-30 137.1 85 78.8
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.4e-28 130.2 206 80.1
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.1e-28 129.4 270 65.2
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.5e-27 125.9 270 64.8
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 4.5e-27 125.9 265 55.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.4e-23 114.4 274 56.9
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 5.2e-23 112.5 86 68.6
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 4.8e-21 105.9 83 62.7
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 3.5e-19 99.8 82 59.8
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 5.7e-14 82.4 53 77.4
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 4.0e-07 59.7 62 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.5e-06 57.8 255 54.9
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 9.8e-06 55.1 37 75.7
MBI06_g37371_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D006810 9.8e-06 55.1 99 39.4


User provided reference genes

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