Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 0.0e+00 1350.1 747 100.0
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 0.0e+00 1112.1 756 79.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.5e-287 991.5 751 76.6
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.8e-287 990.3 751 76.4
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.9e-286 988.0 751 76.4
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.7e-193 680.2 768 55.6
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 3.6e-191 672.5 686 57.6
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 3.1e-190 669.5 692 55.9
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 4.4e-181 639.0 880 46.6
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 2.3e-177 626.7 833 47.2
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.1e-176 624.4 664 55.3
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.1e-175 620.2 665 54.7
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 5.3e-174 615.5 799 49.6
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.2e-173 614.4 774 52.6
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 4.9e-172 609.0 798 51.0
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 6.4e-172 608.6 875 47.3
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.4e-171 607.4 780 52.7
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 4.3e-168 595.9 718 53.3
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.6e-167 594.0 683 52.6
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.1e-163 581.3 714 52.1
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.7e-162 576.6 611 52.7
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 6.7e-161 572.0 663 49.9
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 8.7e-161 571.6 660 50.3
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 7.4e-160 568.5 585 57.9
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.8e-159 565.8 644 49.1
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.1e-158 564.7 804 49.8
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.0e-158 561.6 752 44.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.3e-153 547.7 663 51.1
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 8.7e-153 545.0 873 44.1
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.7e-151 539.7 779 44.8
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 7.6e-149 531.9 701 48.1
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 7.6e-149 531.9 808 43.7
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.0e-148 531.6 815 45.4
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 3.8e-148 529.6 655 45.8
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.1e-147 528.1 666 48.8
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 9.3e-147 525.0 682 48.7
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 3.5e-146 523.1 700 47.6
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 4.6e-146 522.7 682 48.5
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 2.3e-145 520.4 737 45.9
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.0e-145 520.0 800 46.0
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 6.7e-145 518.8 665 49.5
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-143 514.6 680 49.9
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.8e-143 513.5 676 49.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 9.0e-142 508.4 754 45.4
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 5.0e-140 502.7 750 46.0
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.4e-139 501.1 760 44.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 9.4e-139 498.4 724 46.7
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 3.0e-137 493.4 687 45.4
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 2.0e-136 490.7 832 41.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.3e-136 489.6 671 43.5
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-135 488.0 753 45.3
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.7e-135 487.6 664 46.5
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 8.2e-135 485.3 800 43.0
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 3.4e-133 479.9 753 44.6
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.7e-132 477.6 734 44.0
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 6.5e-132 475.7 795 42.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.1e-131 474.9 665 42.6
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.2e-130 471.5 683 44.8
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 1.6e-130 471.1 666 47.0
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.4e-129 468.0 665 42.1
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.4e-129 468.0 672 44.2
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.0e-129 466.8 760 43.6
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.3e-127 461.5 781 41.2
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 8.2e-127 458.8 778 38.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.4e-126 458.0 639 42.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 2.4e-126 457.2 769 42.3
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 5.9e-125 452.6 781 42.3
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 4.2e-123 446.4 763 42.3
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.5e-123 446.0 660 42.3
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 7.2e-123 445.7 301 77.1
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.2e-122 444.9 647 43.1
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.6e-122 444.5 815 41.2
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.7e-122 443.7 951 38.0
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.7e-122 443.7 577 43.5
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.7e-122 443.0 795 39.2
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 5.2e-121 439.5 806 41.7
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 6.7e-121 439.1 764 40.8
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.1e-120 438.3 806 41.7
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.5e-120 438.0 668 41.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 2.6e-120 437.2 754 40.8
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 7.4e-120 435.6 806 41.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 4.1e-118 429.9 795 41.6
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.5e-117 426.8 773 40.8
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.0e-116 422.9 640 41.6
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 8.5e-116 422.2 662 40.2
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.5e-115 421.4 670 44.3
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.2e-115 420.2 688 40.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 7.2e-115 419.1 667 39.7
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 8.0e-114 415.6 650 40.0
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.0e-113 415.2 279 76.0
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.4e-113 414.8 645 39.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.4e-110 404.1 674 39.3
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 9.1e-110 402.1 665 42.1
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.5e-109 400.2 722 36.6
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.9e-109 399.4 721 36.1
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 5.9e-109 399.4 783 35.6
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 2.9e-108 397.1 610 51.5
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.0e-104 384.4 796 36.7
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 8.6e-100 369.0 671 37.3
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-99 368.6 640 40.3
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 7.2e-99 365.9 633 41.1
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.2e-98 365.2 799 38.8
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.3e-95 355.1 848 32.8
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.2e-94 350.5 639 36.6
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 9.2e-94 349.0 689 37.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.0e-92 345.5 693 37.4
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-92 345.1 677 36.0
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 3.4e-88 330.5 751 36.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 5.4e-86 323.2 802 32.4
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 2.0e-85 321.2 858 32.1
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.5e-83 315.1 821 31.1
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 3.6e-82 310.5 629 41.3
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 8.3e-79 299.3 435 50.6
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 5.4e-78 296.6 672 36.8
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 8.6e-76 289.3 684 33.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.5e-75 285.8 629 32.4
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.4e-64 250.8 655 29.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.8e-63 247.3 277 50.9
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 4.0e-57 227.3 276 48.2
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 3.8e-55 220.7 406 45.3
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 5.4e-54 216.9 350 44.0
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.7e-52 211.8 742 27.5
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-48 199.1 172 56.4
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.6e-40 171.4 145 59.3
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.3e-36 158.3 202 43.6
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.2e-32 146.0 129 58.9
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.6e-32 144.8 149 50.3
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 3.4e-32 144.4 771 26.2
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.9e-30 138.7 126 55.6
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 3.2e-30 137.9 475 31.8
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 5.3e-25 120.6 292 32.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.1e-22 112.8 466 27.3
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.3e-18 99.4 278 30.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 5.3e-17 94.0 147 38.1
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 9.1e-17 93.2 76 64.5
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.6e-16 91.7 200 30.5
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.7e-15 89.0 167 34.7
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.2e-10 72.0 170 32.4
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 3.1e-09 68.2 65 50.8
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 1.0e-07 63.2 50 60.0


User provided reference genes

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