Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 0.0e+00 1260.4 634 100.0
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 5.4e-305 1050.4 720 74.6
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 6.9e-300 1033.5 711 74.7
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 7.6e-299 1030.0 711 74.4
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 9.9e-299 1029.6 710 74.5
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 3.3e-246 855.1 716 63.3
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 5.7e-246 854.4 712 62.5
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 5.9e-243 844.3 712 62.4
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.0e-242 843.6 707 61.4
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 4.2e-241 838.2 673 63.3
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 5.5e-241 837.8 715 60.1
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 2.1e-240 835.9 708 60.6
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 5.2e-239 831.2 713 60.3
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.7e-237 825.1 738 58.9
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 5.3e-236 821.2 707 60.4
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 3.5e-235 818.5 716 60.1
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 2.5e-233 812.4 751 58.7
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.2e-232 810.1 710 59.9
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 2.7e-232 808.9 716 59.2
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.8e-231 806.2 709 59.0
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 5.2e-231 804.7 717 59.3
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 6.8e-231 804.3 776 55.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 7.0e-228 794.3 712 59.6
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 9.5e-225 783.9 752 56.0
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 5.7e-222 774.6 710 57.2
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.8e-220 769.6 712 56.7
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 7.8e-219 764.2 714 58.0
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 5.0e-218 761.5 706 55.5
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.9e-217 759.6 707 56.3
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 4.3e-217 758.4 707 54.9
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 4.3e-217 758.4 708 56.2
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 9.5e-217 757.3 707 56.9
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 9.5e-217 757.3 706 56.1
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 1.2e-216 756.9 707 55.4
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.6e-216 756.5 708 56.1
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 2.1e-216 756.1 707 55.3
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.8e-216 755.7 701 56.9
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 3.6e-216 755.4 708 55.6
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 6.1e-216 754.6 700 56.3
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 6.1e-216 754.6 708 56.1
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 8.0e-216 754.2 707 55.2
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 8.0e-216 754.2 665 59.2
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 5.2e-215 751.5 703 56.5
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 6.8e-215 751.1 707 55.3
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 1.5e-214 750.0 734 54.6
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 2.6e-214 749.2 694 57.2
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 2.6e-214 749.2 708 54.2
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 5.8e-214 748.0 707 54.7
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 7.5e-214 747.7 708 55.9
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 7.5e-214 747.7 711 56.3
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 9.8e-214 747.3 707 54.6
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 9.8e-214 747.3 687 56.8
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 2.2e-213 746.1 707 55.2
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 2.9e-213 745.7 707 55.0
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 1.1e-212 743.8 709 54.6
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 4.1e-212 741.9 709 55.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 5.4e-212 741.5 707 53.9
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 2.7e-211 739.2 708 53.5
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 2.7e-211 739.2 707 54.3
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 4.6e-211 738.4 757 52.8
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.3e-210 736.9 707 54.0
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 1.7e-210 736.5 710 54.5
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.0e-210 735.7 707 53.5
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 6.6e-210 734.6 707 55.0
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 5.6e-209 731.5 654 57.2
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 9.5e-209 730.7 704 53.8
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 2.1e-208 729.6 710 54.5
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 6.8e-207 724.5 680 56.0
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 3.4e-206 722.2 708 54.4
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.1e-204 717.2 722 52.9
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 7.0e-204 714.5 722 52.8
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 3.5e-203 712.2 701 53.8
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 4.6e-203 711.8 614 61.2
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.5e-201 706.1 709 53.2
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.3e-194 682.9 517 69.8
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 8.6e-194 681.0 639 57.9
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 9.5e-193 677.6 694 53.2
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 6.2e-192 674.9 717 51.3
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.8e-191 673.3 680 52.5
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 6.8e-191 671.4 629 55.8
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 3.4e-190 669.1 651 55.3
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 2.7e-187 659.4 665 53.5
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.1e-185 654.1 732 50.7
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.6e-182 642.9 714 50.4
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.2e-181 639.8 668 50.3
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.3e-178 630.6 1004 39.8
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.5e-177 627.1 615 55.6
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 3.2e-172 609.4 698 48.7
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.6e-166 589.7 528 60.4
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 1.3e-165 587.4 524 60.1
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 8.7e-162 574.7 630 51.6
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 8.7e-162 574.7 534 56.4
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.8e-159 567.0 574 52.4
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 8.5e-141 505.0 695 43.6
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 2.6e-137 493.4 578 46.5
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 7.0e-135 485.3 637 45.2
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 1.3e-133 481.1 649 41.4
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.1e-127 461.5 686 41.0
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 7.0e-119 432.2 431 54.3
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 5.9e-118 429.1 325 64.9
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 4.2e-108 396.4 275 69.8
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.4e-103 381.3 263 72.6
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.0e-101 375.2 280 68.2
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 3.3e-92 343.6 421 45.8
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 4.3e-92 343.2 354 51.1
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 8.1e-91 339.0 327 54.7
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 1.1e-87 328.6 498 37.8
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.2e-81 308.5 409 44.0
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 2.9e-80 303.9 252 59.9
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 9.2e-79 298.9 345 46.7
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.2e-78 298.5 282 56.0
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 1.2e-70 271.9 277 50.9
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.9e-68 264.6 255 53.3
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 5.6e-52 209.9 619 30.2
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.8e-43 181.0 356 36.5
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 1.1e-42 179.1 131 68.7
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 1.4e-42 178.7 113 74.3
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 7.9e-38 162.9 122 64.8
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.0e-37 162.5 111 73.9
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 5.7e-36 156.8 103 75.7
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 7.4e-36 156.4 268 43.3
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-36 156.4 274 36.1
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-35 155.6 191 47.1
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 3.9e-29 134.0 657 23.9
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 6.7e-29 133.3 125 57.6
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-24 119.0 84 60.7
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 4.7e-22 110.5 74 67.6
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.3e-21 108.2 186 37.1
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.5e-20 105.5 188 35.6
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.4e-18 98.2 182 35.7
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.2e-17 95.9 164 39.0
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.9e-15 88.6 88 52.3
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 1.9e-15 88.6 65 72.3
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.6e-14 85.5 46 78.3
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.6e-14 84.3 89 46.1
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.7e-14 84.0 53 66.0
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.1e-14 83.6 46 76.1
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.7e-13 80.1 46 73.9
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.5e-12 79.0 50 68.0
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 2.6e-12 78.2 208 27.4
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 1.8e-10 72.0 55 65.5
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 2.0e-09 68.6 53 67.9
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 3.8e-08 64.3 43 74.4
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 5.5e-07 60.5 375 22.1


User provided reference genes

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