Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.2e-174 615.5 312 100.0
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 3.7e-129 465.3 311 76.2
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 5.7e-122 441.4 311 74.3
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.1e-120 435.3 307 72.6
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.2e-119 433.7 307 72.6
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.0e-115 420.6 306 72.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.4e-104 383.6 308 66.9
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.1e-100 368.2 303 63.4
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.7e-94 350.1 261 70.1
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.1e-88 327.8 306 58.5
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.0e-87 326.6 306 58.5
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.7e-73 279.3 323 52.6
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 4.1e-72 275.8 320 50.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.4e-72 275.4 322 52.5
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.0e-67 261.2 322 50.3
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.7e-65 252.7 315 47.0
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.9e-65 252.3 325 51.1
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.6e-63 247.3 332 48.2
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 8.6e-62 241.5 311 49.2
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.5e-61 240.7 312 48.4
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 7.8e-55 218.4 306 47.7
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.0e-54 216.5 241 54.4
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.6e-53 212.2 316 44.0
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 8.1e-52 208.4 308 43.8
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.2e-49 200.3 315 42.9
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.4e-48 197.6 310 41.9
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.2e-48 196.4 320 40.0
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.5e-47 193.0 320 39.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.0e-46 189.9 312 40.7
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.1e-46 189.1 318 41.2
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 9.6e-45 184.9 330 40.0
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 2.1e-44 183.7 315 40.6
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.6e-44 183.0 297 39.7
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.6e-44 183.0 308 39.0
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.7e-44 182.6 297 39.4
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.4e-43 181.0 323 39.3
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.4e-43 180.3 309 39.8
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.1e-43 179.9 317 40.7
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 8.9e-43 178.3 323 39.3
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.2e-42 177.9 308 40.9
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.0e-42 177.2 320 40.9
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.6e-42 176.8 320 40.3
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.6e-42 176.8 319 40.1
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.6e-42 176.8 320 39.7
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.6e-42 176.8 321 38.9
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.2e-41 173.7 294 38.8
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 2.2e-41 173.7 316 39.9
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.8e-41 172.9 315 39.7
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.9e-41 172.6 323 36.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 6.4e-41 172.2 318 39.3
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 8.4e-41 171.8 316 38.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.4e-40 171.0 323 39.0
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.9e-40 170.6 301 40.9
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 2.4e-40 170.2 308 40.6
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.4e-40 170.2 321 39.6
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 3.2e-40 169.9 321 38.6
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 4.2e-40 169.5 306 37.6
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 7.1e-40 168.7 321 38.6
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 7.1e-40 168.7 306 37.6
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.6e-39 167.5 301 40.2
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 4.6e-39 166.0 313 39.3
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 6.0e-39 165.6 324 37.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 8.7e-38 161.8 229 45.0
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-37 161.4 322 37.9
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-37 161.4 322 37.9
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.1e-37 161.4 316 38.6
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.5e-37 161.0 309 38.2
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.5e-37 161.0 318 37.7
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 3.3e-37 159.8 312 38.5
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 3.3e-37 159.8 320 37.5
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 3.3e-37 159.8 320 37.5
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 4.3e-37 159.5 311 37.0
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 2.1e-36 157.1 322 37.6
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 2.1e-36 157.1 335 33.7
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 6.2e-36 155.6 299 37.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.1e-35 154.8 323 35.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.8e-35 154.1 324 34.6
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.4e-35 153.7 318 36.2
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 2.4e-35 153.7 336 35.7
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 9.0e-35 151.8 318 38.1
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 9.0e-35 151.8 198 49.5
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 9.0e-35 151.8 295 37.6
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-34 151.4 321 37.4
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.2e-34 151.4 317 34.7
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.5e-34 151.0 326 35.6
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.5e-34 151.0 314 35.0
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.6e-34 150.2 312 38.8
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 4.5e-34 149.4 311 35.7
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.5e-34 149.4 324 36.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 5.8e-34 149.1 322 37.6
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 7.6e-34 148.7 305 34.1
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 9.9e-34 148.3 320 35.9
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.9e-33 146.7 322 37.3
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.9e-33 146.7 324 36.1
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.8e-33 146.4 297 38.7
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 4.9e-33 146.0 322 34.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 6.4e-33 145.6 322 37.3
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.4e-32 144.4 325 35.4
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 4.2e-32 142.9 311 36.0
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.4e-32 142.5 310 36.5
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 7.1e-32 142.1 320 36.6
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.2e-31 141.4 322 35.1
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.6e-31 141.0 321 35.2
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 7.9e-31 138.7 313 37.1
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.0e-30 138.3 302 34.8
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.3e-30 137.9 310 36.8
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.3e-30 137.9 295 36.9
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.0e-30 136.7 322 33.9
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 5.1e-30 136.0 310 36.8
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 8.7e-30 135.2 319 34.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 2.5e-29 133.7 317 34.4
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.3e-29 133.3 274 38.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 4.3e-29 132.9 317 34.7
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 1.3e-28 131.3 308 35.1
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.6e-28 131.0 303 34.3
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.1e-28 130.6 317 34.1
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.2e-28 129.0 315 34.9
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 6.2e-28 129.0 315 34.9
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 6.2e-28 129.0 315 34.9
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.1e-27 126.7 303 34.3
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.0e-26 124.0 303 32.7
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 2.1e-23 114.0 309 34.0
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.7e-23 113.6 319 30.7
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 3.5e-23 113.2 284 32.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 4.6e-23 112.8 264 35.6
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 7.9e-23 112.1 305 31.1
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 5.6e-21 105.9 305 31.5
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.6e-20 104.4 296 30.1
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 2.1e-20 104.0 160 43.1
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 6.2e-20 102.4 318 30.5
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 6.2e-20 102.4 262 33.2
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.4e-19 101.3 303 29.0
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.4e-19 100.5 315 27.6
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.1e-19 100.1 304 29.9
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 6.9e-19 99.0 265 32.5
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.8e-18 95.9 287 31.4
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 5.8e-18 95.9 301 28.6
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 6.5e-17 92.4 261 30.7
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 8.4e-17 92.0 313 30.7
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.1e-16 91.7 266 32.0
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.9e-16 90.9 197 38.6
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 7.1e-16 89.0 268 31.3
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.0e-14 83.6 256 32.8
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 5.1e-14 82.8 280 30.7
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 1.5e-13 81.3 356 25.8
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.6e-12 77.8 282 29.8
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 2.8e-12 77.0 250 31.2
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 3.7e-12 76.6 188 31.4
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 2.0e-10 70.9 170 34.1
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 4.5e-10 69.7 144 34.0
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 5.9e-10 69.3 294 31.0
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.3e-09 68.2 300 28.0


User provided reference genes

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