Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 7.6e-91 337.0 158 100.0
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 8.5e-74 280.4 151 87.4
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 2.6e-67 258.8 143 85.3
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.1e-65 253.4 143 82.5
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 7.2e-65 250.8 143 81.1
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 7.2e-65 250.8 143 81.1
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.6e-64 249.6 135 83.0
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.0e-63 246.9 135 82.2
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.8e-63 246.1 135 80.0
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 3.0e-63 245.4 135 82.2
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 5.1e-63 244.6 150 76.7
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-62 243.0 135 79.3
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.0e-62 242.7 158 73.4
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 9.7e-62 240.4 158 72.2
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.7e-61 239.6 144 76.4
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 4.8e-61 238.0 137 78.1
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.1e-60 236.9 138 78.3
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.1e-60 236.9 140 74.3
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.4e-60 235.7 145 71.7
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 3.1e-60 235.3 135 78.5
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.3e-60 234.6 145 71.0
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.0e-60 234.2 145 71.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.2e-59 233.4 138 76.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.2e-59 233.4 135 79.3
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.6e-59 233.0 137 73.7
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-59 232.6 145 71.0
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-59 232.3 152 71.1
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.5e-59 231.9 135 77.8
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 3.5e-59 231.9 149 72.5
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 7.7e-59 230.7 138 73.2
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.3e-58 229.9 138 73.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.2e-58 229.2 141 73.0
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 2.5e-57 225.7 143 71.3
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 3.2e-57 225.3 144 68.8
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 5.5e-57 224.6 134 73.1
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 5.5e-57 224.6 144 70.8
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.6e-56 223.0 144 71.5
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.6e-56 221.9 135 74.8
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 3.6e-56 221.9 143 72.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 4.7e-56 221.5 137 73.7
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 4.7e-56 221.5 137 73.7
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.7e-56 221.5 135 74.8
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 4.7e-56 221.5 139 74.1
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.4e-55 219.9 134 71.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.4e-55 219.9 135 74.1
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.8e-55 219.5 137 74.5
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 4.0e-55 218.4 134 72.4
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 4.0e-55 218.4 135 74.1
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 5.2e-55 218.0 137 71.5
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 5.2e-55 218.0 151 64.2
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 5.2e-55 218.0 145 66.9
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 5.2e-55 218.0 145 66.9
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 5.2e-55 218.0 145 66.9
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 5.2e-55 218.0 149 67.1
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 6.7e-55 217.6 146 67.8
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 6.7e-55 217.6 148 63.5
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 6.7e-55 217.6 135 71.9
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-54 216.9 135 73.3
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.5e-54 216.5 138 73.2
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 2.6e-54 215.7 147 69.4
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-54 215.3 145 65.5
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 4.4e-54 214.9 139 70.5
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 5.7e-54 214.5 137 70.8
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.5e-54 214.2 151 65.6
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.5e-54 214.2 151 65.6
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 9.7e-54 213.8 137 70.8
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 9.7e-54 213.8 136 71.3
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.3e-53 213.4 147 66.7
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-53 213.0 134 70.1
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.2e-53 212.6 144 66.0
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 4.8e-53 211.5 148 64.2
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 8.2e-53 210.7 135 65.9
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.4e-52 209.9 134 72.4
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.8e-52 209.5 134 68.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.8e-52 209.5 138 65.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.1e-52 208.8 147 62.6
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.1e-52 208.8 147 62.6
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 4.1e-52 208.4 139 64.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.0e-52 207.6 173 58.4
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.2e-51 206.8 130 71.5
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.2e-51 206.8 138 68.1
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 2.0e-51 206.1 151 62.9
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.7e-51 205.7 134 70.9
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.7e-51 205.7 147 68.0
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 2.7e-51 205.7 143 67.1
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 3.5e-51 205.3 137 65.7
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.5e-51 205.3 136 69.1
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 4.5e-51 204.9 135 68.9
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 5.9e-51 204.5 144 62.5
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.9e-51 204.5 144 62.5
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 5.9e-51 204.5 140 69.3
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.0e-50 203.8 135 66.7
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-50 203.8 135 66.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-50 203.4 144 63.9
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-50 203.4 144 63.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-50 203.0 142 66.9
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 5.0e-50 201.4 136 67.6
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 5.0e-50 201.4 136 67.6
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.5e-50 200.7 135 65.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.1e-49 200.3 137 65.0
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-49 199.5 134 67.9
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.5e-49 199.1 134 64.2
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-49 198.7 136 66.9
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.5e-49 198.0 136 66.2
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 9.4e-49 197.2 135 63.7
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 9.4e-49 197.2 137 67.9
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.6e-48 196.4 147 59.2
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.6e-48 196.4 147 59.2
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.1e-48 196.1 136 65.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.7e-48 195.7 134 61.9
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.4e-47 193.4 127 64.6
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.8e-47 193.0 141 63.1
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.0e-47 191.8 148 59.5
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 4.0e-47 191.8 141 61.0
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.8e-47 191.0 148 59.5
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.2e-46 190.3 148 59.5
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.4e-46 188.7 135 61.5
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 5.7e-46 188.0 146 56.2
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 9.8e-46 187.2 137 65.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.7e-45 186.4 128 64.1
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.7e-45 186.4 137 61.3
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 6.3e-45 184.5 135 62.2
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.8e-44 183.0 131 58.8
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.0e-43 179.5 139 58.3
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.7e-43 179.1 146 57.5
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-43 178.7 134 62.7
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 4.5e-43 178.3 147 53.1
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.5e-43 178.3 139 59.7
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 7.7e-43 177.6 151 55.6
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 7.7e-43 177.6 139 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.9e-42 175.6 141 56.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 2.9e-42 175.6 139 57.6
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 8.5e-42 174.1 97 75.3
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 8.5e-42 174.1 136 56.6
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.9e-41 172.9 142 58.5
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.2e-41 172.2 136 55.1
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.5e-41 171.4 211 43.1
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 8.0e-40 167.5 134 52.2
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 8.0e-40 167.5 139 59.0
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.0e-39 167.2 135 59.3
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 1.8e-39 166.4 135 60.0
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 4.0e-39 165.2 112 71.4
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 8.8e-39 164.1 132 56.8
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 6.3e-37 157.9 112 67.0
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.1e-36 157.1 132 51.5
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 5.6e-33 144.8 136 49.3
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 7.3e-33 144.4 96 63.5
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.3e-33 144.4 145 50.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 2.1e-32 142.9 134 50.7
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.0e-31 140.6 134 48.5
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.3e-31 139.4 143 47.6
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 7.5e-30 134.4 143 46.9
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.3e-26 122.9 130 50.8
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.1e-24 116.3 130 46.2
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.0e-22 109.8 71 63.4
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 5.8e-22 108.2 132 42.4
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 9.8e-22 107.5 116 46.6
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 5.4e-20 101.7 75 64.0
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.0e-20 101.3 109 47.7
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 3.5e-19 99.0 54 74.1
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 6.0e-19 98.2 52 71.2
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 8.6e-18 94.4 73 64.4
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.8e-15 86.7 90 50.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-14 84.0 82 53.7
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.2e-14 84.0 68 60.3
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 1.5e-14 83.6 103 45.6
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 3.2e-12 75.9 39 74.4
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 6.6e-10 68.2 70 50.0
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 4.3e-09 65.5 71 52.1
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 4.0e-07 58.9 38 71.1
Cre07.g336000 Chlamydomonas reinhardtii HOM05D065225 ORTHO05D044221 1.5e-06 57.0 147 32.0


User provided reference genes

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