Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 6.9e-198 693.7 340 100.0
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 8.6e-140 500.7 269 90.3
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.8e-129 466.5 275 84.4
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.0e-129 465.3 271 85.6
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.5e-128 461.1 271 84.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 7.5e-128 461.1 271 84.9
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 6.4e-127 458.0 271 84.1
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-97 360.1 273 72.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.1e-97 359.4 273 71.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.4e-94 350.5 282 68.1
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-93 347.1 273 70.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 7.9e-93 344.7 304 63.8
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.0e-92 344.4 291 67.7
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.9e-91 340.1 283 68.6
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.5e-88 330.5 285 66.0
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 7.1e-86 321.6 284 63.4
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 7.9e-85 318.2 295 62.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.8e-84 317.0 290 62.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 2.5e-83 313.2 252 69.0
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.1e-82 310.1 283 62.5
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 8.2e-82 308.1 296 62.5
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.4e-81 306.6 294 60.5
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.2e-72 277.7 262 64.9
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.5e-72 277.3 305 58.0
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.0e-72 276.9 306 55.2
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.0e-71 274.6 271 61.6
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.4e-68 264.2 289 57.4
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.4e-68 264.2 288 57.6
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 8.8e-68 261.5 297 55.9
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.1e-67 261.2 284 57.7
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.5e-67 260.8 295 58.6
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 9.7e-67 258.1 289 56.4
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.3e-66 257.7 292 56.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.7e-66 257.3 290 54.1
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 2.8e-66 256.5 320 52.8
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 3.1e-65 253.1 310 51.3
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 3.1e-65 253.1 286 58.0
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 5.3e-65 252.3 269 57.2
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 5.0e-63 245.7 261 53.6
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.9e-62 243.8 316 56.0
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 5.5e-62 242.3 333 48.6
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 6.1e-61 238.8 211 65.9
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 7.9e-61 238.4 315 53.7
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.8e-60 237.3 229 59.8
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.8e-60 237.3 284 53.9
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.8e-60 237.3 229 58.1
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 5.1e-60 235.7 260 55.4
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 5.1e-60 235.7 290 53.1
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.5e-59 234.2 286 54.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 4.8e-58 229.2 295 54.6
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.4e-57 227.6 286 52.1
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.3e-57 225.7 259 54.8
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.2e-56 224.6 282 51.8
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.6e-56 223.4 268 50.4
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.5e-56 223.0 286 52.8
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.9e-56 222.2 344 50.0
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.9e-56 222.2 344 50.0
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.9e-55 219.9 351 48.7
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 3.8e-55 219.5 352 46.6
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 5.0e-55 219.2 212 62.3
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 8.5e-55 218.4 253 54.5
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.1e-54 218.0 262 53.8
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.5e-54 216.9 289 50.9
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 7.2e-54 215.3 248 54.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 7.2e-54 215.3 254 53.5
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 4.7e-53 212.6 267 54.3
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 6.1e-53 212.2 304 48.4
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 5.2e-52 209.1 249 50.6
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 9.7e-51 204.9 278 50.0
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 9.1e-49 198.4 281 49.8
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.0e-48 197.2 294 46.6
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.8e-47 193.0 283 47.7
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 6.5e-47 192.2 243 53.5
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.5e-46 189.1 282 48.2
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 5.5e-46 189.1 289 47.8
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 7.2e-46 188.7 280 48.9
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 7.2e-46 188.7 280 48.9
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 7.2e-46 188.7 280 48.9
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.6e-45 187.6 278 49.3
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.6e-45 187.6 312 45.2
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-45 186.8 279 48.4
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 4.7e-45 186.0 223 53.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 4.7e-45 186.0 300 45.3
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.1e-45 185.7 345 43.8
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 8.0e-45 185.3 256 50.0
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.3e-44 183.7 239 50.6
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 6.8e-44 182.2 257 48.6
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 8.8e-44 181.8 210 55.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 8.8e-44 181.8 303 46.9
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-43 181.0 249 48.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.0e-43 180.6 221 49.3
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.4e-43 179.9 222 51.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 9.8e-43 178.3 308 45.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 9.8e-43 178.3 198 57.1
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.3e-42 177.9 285 46.3
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.2e-42 177.2 223 49.8
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.8e-41 174.1 278 46.8
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.8e-41 174.1 279 45.5
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 7.0e-41 172.2 277 45.1
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.7e-40 170.2 231 45.9
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 4.5e-40 169.5 227 49.8
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 5.9e-40 169.1 198 54.0
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.9e-39 166.8 207 51.2
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.8e-39 166.4 291 44.7
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.2e-38 162.9 223 48.0
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 7.2e-38 162.2 238 47.1
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.6e-37 159.8 287 40.4
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 6.1e-37 159.1 149 63.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.4e-35 153.3 222 48.6
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.5e-35 152.1 221 47.1
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.4e-33 147.9 223 45.7
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.3e-31 141.4 158 55.1
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.7e-31 141.0 76 89.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 1.7e-31 141.0 244 41.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 8.6e-31 138.7 84 76.2
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.9e-30 137.5 223 48.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.5e-30 137.1 244 40.2
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 3.3e-30 136.7 217 47.0
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 5.6e-30 136.0 197 48.7
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.8e-29 133.7 161 50.3
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 4.7e-29 132.9 237 39.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.1e-29 132.5 219 44.3
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.0e-28 131.7 199 47.7
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.4e-28 131.3 222 47.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.0e-28 130.2 217 44.7
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 4.0e-28 129.8 230 44.3
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.6e-27 127.1 217 43.8
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.4e-27 126.7 229 44.1
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.9e-26 122.9 210 42.4
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 6.4e-26 122.5 147 51.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 6.4e-26 122.5 147 51.0
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 4.1e-25 119.8 221 42.1
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 5.4e-25 119.4 222 41.9
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-24 117.5 213 43.7
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.0e-24 117.5 213 43.7
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.0e-23 113.6 101 65.3
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 8.6e-23 112.1 231 38.5
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 3.3e-22 110.2 242 43.8
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 2.1e-21 107.5 187 41.2
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.0e-20 105.1 267 38.2
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 3.4e-19 100.1 280 35.4
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.8e-19 99.4 215 42.8
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 9.2e-17 92.0 198 39.4
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.7e-16 90.5 268 35.8
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 6.0e-16 89.4 281 34.9
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 6.0e-16 89.4 244 34.8
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 9.5e-14 82.0 284 31.0
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 6.2e-13 79.3 204 36.8
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 1.8e-12 77.8 77 57.1
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 2.0e-11 74.3 165 35.8
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 7.5e-11 72.4 104 47.1
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.7e-10 70.1 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.7e-10 70.1 43 74.4
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.4e-10 69.3 65 56.9
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 1.9e-09 67.8 234 32.1
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 9.2e-09 65.5 142 39.4
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.0e-08 62.8 46 60.9
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 6.0e-08 62.8 62 54.8
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.0e-07 62.0 148 36.5
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.9e-07 60.1 71 47.9
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 8.6e-07 58.9 217 31.8
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 8.6e-07 58.9 217 31.8
Rhsim01G0123100 Rhododendron simsii HOM05D000333 ORTHO05D000190 1.5e-06 58.2 207 29.0
Cpa.g.sc127.8 Carica papaya HOM05D000333 ORTHO05D000190 1.9e-06 57.8 91 36.3
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 1.9e-06 57.8 152 36.2
Aa31LG2G3420 Aethionema arabicum HOM05D001250 ORTHO05D000627 2.5e-06 57.4 122 34.4
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 7.3e-06 55.8 244 31.1


User provided reference genes

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