Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 8.0e-149 531.6 602 100.0
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.5e-118 431.0 602 90.0
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 1.2e-115 421.4 598 88.1
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 3.9e-103 379.8 602 87.4
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.1e-102 378.3 602 87.2
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 6.9e-100 369.0 602 85.7
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 6.3e-85 319.3 619 78.7
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.5e-83 314.7 608 80.4
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 6.1e-80 302.8 606 79.4
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.0e-79 302.0 615 79.2
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 4.4e-78 296.6 618 79.3
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.1e-76 290.4 608 79.3
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.1e-76 290.4 608 79.3
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 9.1e-76 288.9 620 78.2
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 2.6e-75 287.3 569 81.7
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.3e-74 285.0 613 78.8
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.3e-74 285.0 609 77.5
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.2e-72 278.5 564 62.4
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 3.6e-72 276.9 603 79.4
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 1.5e-70 271.6 644 64.6
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 2.6e-70 270.8 617 76.3
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 4.8e-69 266.5 612 73.5
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 8.2e-69 265.8 612 73.5
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 8.2e-69 265.8 613 75.4
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 1.1e-68 265.4 551 82.0
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.3e-68 263.1 558 81.4
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 1.6e-67 261.5 605 74.9
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 2.0e-67 261.2 609 75.2
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 1.5e-65 255.0 604 77.2
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 2.5e-65 254.2 615 76.1
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.5e-65 254.2 564 79.6
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 3.2e-65 253.8 609 72.6
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 4.2e-65 253.4 616 76.0
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.2e-65 253.4 569 80.1
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 9.4e-65 252.3 613 76.0
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 1.2e-64 251.9 615 75.9
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 1.0e-63 248.8 599 76.6
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.8e-63 248.1 616 75.5
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 3.0e-63 247.3 598 77.1
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 5.2e-63 246.5 617 66.1
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 8.8e-63 245.7 602 75.9
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 4.4e-62 243.4 589 76.2
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 4.4e-62 243.4 613 75.5
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 9.7e-62 242.3 557 81.0
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 4.8e-61 240.0 582 77.5
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 6.3e-61 239.6 558 80.6
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 1.1e-60 238.8 604 74.2
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.4e-60 237.7 560 75.7
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 2.4e-60 237.7 574 78.4
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 9.1e-60 235.7 655 70.7
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 1.2e-59 235.3 595 64.0
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 2.7e-59 234.2 537 81.2
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 3.5e-59 233.8 635 68.2
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 7.7e-59 232.6 602 76.4
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 3.8e-58 230.3 535 81.5
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 5.0e-58 229.9 584 75.7
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 6.5e-58 229.6 608 74.8
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 6.5e-58 229.6 603 74.5
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.1e-57 228.8 572 77.3
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 1.5e-57 228.4 605 75.0
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 1.5e-57 228.4 623 73.0
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.9e-57 228.0 560 77.7
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 4.7e-56 223.4 616 73.5
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 6.1e-56 223.0 560 78.8
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.4e-55 221.9 234 57.3
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.8e-55 221.5 617 74.9
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 5.2e-55 219.9 599 75.3
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 5.2e-55 219.9 599 75.5
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 5.2e-55 219.9 599 75.5
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 8.8e-55 219.2 599 75.3
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 8.8e-55 219.2 599 75.3
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.2e-54 218.8 610 74.1
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.2e-54 218.8 587 75.5
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 2.6e-54 217.6 616 65.6
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 7.5e-54 216.1 576 76.6
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 2.2e-53 214.5 570 76.1
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 3.7e-53 213.8 604 75.0
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 8.3e-53 212.6 217 54.8
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 2.0e-51 208.0 583 75.3
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 3.5e-51 207.2 174 62.1
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 5.9e-51 206.5 539 67.2
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.0e-50 205.7 172 61.6
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.0e-50 205.7 661 69.7
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 5.0e-50 203.4 609 71.6
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 6.5e-50 203.0 602 72.8
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 1.5e-49 201.8 228 51.3
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.5e-49 201.8 572 74.8
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 4.2e-49 200.3 227 49.8
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 6.1e-48 196.4 542 76.2
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 1.4e-47 195.3 231 50.6
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 1.5e-46 191.8 167 58.1
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 9.8e-46 189.1 235 51.1
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.4e-44 185.3 595 59.3
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.8e-44 184.9 562 76.3
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 7.0e-44 183.0 471 87.5
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 9.2e-44 182.6 194 56.7
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 4.5e-43 180.3 488 83.6
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 5.0e-42 176.8 214 50.0
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 3.3e-41 174.1 610 71.3
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 7.3e-41 172.9 260 45.0
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 2.1e-40 171.4 501 79.8
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 8.0e-40 169.5 164 57.3
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 1.5e-38 165.2 212 48.6
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.4e-38 163.7 181 53.0
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.4e-38 163.7 181 53.0
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 2.9e-37 161.0 147 59.9
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 2.3e-34 151.4 116 63.8
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.1e-33 149.1 116 64.7
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.5e-33 148.7 543 69.4
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 4.7e-32 143.7 549 74.3
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 3.1e-31 141.0 188 45.7
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 6.6e-26 123.2 210 41.0
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.5e-25 122.1 239 90.4
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.2e-24 119.0 616 67.2
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 5.8e-22 110.2 172 42.4
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 8.1e-16 89.7 165 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.0e-14 85.1 72 58.3
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 9.9e-14 82.8 405 65.2
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 3.8e-13 80.9 87 74.7
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 4.1e-12 77.4 55 67.3
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 3.9e-10 70.9 241 79.7
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 3.9e-10 70.9 241 79.7
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 2.5e-09 68.2 62 51.6
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 2.1e-08 65.1 135 33.3
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 2.4e-07 61.6 241 75.1
Cpa.g.sc367.5 Carica papaya HOM05D006250 ORTHO05D007107 3.1e-07 61.2 112 39.3
AL1G24250 Arabidopsis lyrata HOM05D014944 ORTHO05D007107 4.4e-06 57.4 29 93.1


User provided reference genes

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