Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib251G0007 Durio zibethinus HOM05D007063 ORTHO05D008822 1.1e-147 527.7 251 100.0
Thecc.02G235700 Theobroma cacao HOM05D007063 ORTHO05D008822 8.6e-105 385.2 229 81.2
Gohir.A03G145400 Gossypium hirsutum HOM05D007063 ORTHO05D008822 1.9e-99 367.5 229 76.9
Gohir.D02G168800 Gossypium hirsutum HOM05D007063 ORTHO05D008822 3.2e-99 366.7 229 76.4
Gorai.005G189200 Gossypium raimondii HOM05D007063 ORTHO05D008822 4.1e-99 366.3 229 76.4
COL.COLO4_04706 Corchorus olitorius HOM05D007063 ORTHO05D008822 5.6e-96 355.9 250 70.8
QL03p066494 Quercus lobata HOM05D007063 ORTHO05D008822 7.1e-83 312.4 239 62.3
Manes.05G095100 Manihot esculenta HOM05D007063 ORTHO05D008822 1.2e-82 311.6 234 64.1
Cfa009057 Carpinus fangiana HOM05D007063 ORTHO05D008822 1.0e-81 308.5 225 66.7
Haze_12090 Corylus avellana HOM05D007063 ORTHO05D008822 1.1e-80 305.1 225 66.2
Potri.010G035700 Populus trichocarpa HOM05D007063 ORTHO05D008822 3.3e-80 303.5 234 63.7
Gorai.013G000300 Gossypium raimondii HOM05D007063 ORTHO05D008822 4.3e-80 303.1 373 46.6
Ciclev10030848m.g Citrus clementina HOM05D007063 ORTHO05D008822 1.6e-79 301.2 230 63.5
Cpa.g.sc5.294 Carica papaya HOM05D007063 ORTHO05D008822 2.8e-79 300.4 229 64.2
CiPaw.05G142300 Carya illinoinensis HOM05D007063 ORTHO05D008822 4.8e-79 299.7 226 65.5
Sabra10G0029200 Salix brachista HOM05D007063 ORTHO05D008822 4.8e-79 299.7 234 63.2
Prupe.3G121700 Prunus persica HOM05D007063 ORTHO05D008822 8.1e-79 298.9 269 55.8
Gohir.A08G253850 Gossypium hirsutum HOM05D007063 ORTHO05D008822 7.6e-77 292.4 269 58.4
MD13G1082300 Malus domestica HOM05D007063 ORTHO05D008822 7.6e-77 292.4 238 60.9
Gohir.D13G000560 Gossypium hirsutum HOM05D007063 ORTHO05D008822 2.2e-76 290.8 229 63.3
TAR376G0861 Trochodendron aralioides HOM05D007063 ORTHO05D008822 9.3e-75 285.4 219 64.8
MD16G1081400 Malus domestica HOM05D007063 ORTHO05D008822 1.6e-74 284.6 238 58.4
Lj9C441T4 Lonicera japonica HOM05D007063 ORTHO05D008822 2.1e-74 284.3 209 62.7
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 3.5e-74 283.5 226 64.2
TWI36G0287 Tripterygium wilfordii HOM05D007063 ORTHO05D008822 2.3e-73 280.8 265 53.2
FvH4_4g35550 Fragaria vesca HOM05D007063 ORTHO05D008822 5.1e-73 279.6 238 59.7
FAN12G0771 Fragaria x ananassa HOM05D007063 ORTHO05D008822 8.7e-73 278.9 238 59.7
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 8.7e-73 278.9 309 49.2
RcHm_v2.0_Chr4g0445191 Rosa chinensis HOM05D007063 ORTHO05D008822 1.1e-72 278.5 229 61.1
FAN07G2566 Fragaria x ananassa HOM05D007063 ORTHO05D008822 1.3e-71 275.0 180 71.7
FAN17G0779 Fragaria x ananassa HOM05D007063 ORTHO05D008822 1.6e-71 274.6 180 71.1
PGR119G2491 Punica granatum HOM05D007063 ORTHO05D008822 1.6e-71 274.6 236 59.3
Eucgr.J02985 Eucalyptus grandis HOM05D007063 ORTHO05D008822 1.1e-70 271.9 231 59.3
RhsimUnG0180400 Rhododendron simsii HOM05D007063 ORTHO05D008822 1.4e-70 271.6 235 58.3
RhsimUnG0211600 Rhododendron simsii HOM05D007063 ORTHO05D008822 1.4e-70 271.6 235 58.3
VMungo0251G0088 Vigna mungo HOM05D007063 ORTHO05D008822 1.4e-70 271.6 234 56.0
FAN22G1231 Fragaria x ananassa HOM05D007063 ORTHO05D008822 1.2e-69 268.5 189 67.7
Glyma.08G294400 Glycine max HOM05D007063 ORTHO05D008822 2.6e-69 267.3 235 56.6
THA.LOC104822081 Tarenaya hassleriana HOM05D007063 ORTHO05D008822 5.8e-69 266.2 231 56.7
Cc11_g13730 Coffea canephora HOM05D007063 ORTHO05D008822 7.6e-69 265.8 227 56.4
Phvul.003G071600 Phaseolus vulgaris HOM05D007063 ORTHO05D008822 1.3e-68 265.0 234 55.6
Thhalv10010012m.g Eutrema salsugineum HOM05D007063 ORTHO05D008822 3.8e-68 263.5 270 50.0
Gorai.010G000600 Gossypium raimondii HOM05D007063 ORTHO05D008822 1.1e-67 261.9 178 70.2
Migut.L01363 Erythranthe guttata HOM05D007063 ORTHO05D008822 1.9e-67 261.2 244 50.4
DCAR_026582 Daucus carota HOM05D007063 ORTHO05D008822 2.7e-66 257.3 228 54.4
Oeu057168.1 Olea europaea HOM05D007063 ORTHO05D008822 3.5e-66 256.9 199 61.3
PSO675G2478 Papaver somniferum HOM05D007063 ORTHO05D008822 7.9e-66 255.8 199 59.8
BcaC06g35638 Brassica carinata HOM05D007063 ORTHO05D008822 1.3e-65 255.0 196 59.7
C07p12680 Brassica napus HOM05D007063 ORTHO05D008822 1.3e-65 255.0 196 59.7
Sp1g04490 Schrenkiella parvula HOM05D007063 ORTHO05D008822 1.8e-65 254.6 191 61.8
PSO541G5427 Papaver somniferum HOM05D007063 ORTHO05D008822 3.9e-65 253.4 199 59.3
EL10Ac6g13122 Beta vulgaris HOM05D007063 ORTHO05D008822 5.1e-65 253.1 216 57.9
Sc04g0008550 Simmondsia chinensis HOM05D007063 ORTHO05D008822 1.1e-64 251.9 225 55.6
Carub.0001s0501 Capsella rubella HOM05D007063 ORTHO05D008822 2.5e-64 250.8 191 61.3
CsaV3_1G045100 Cucumis sativus L. HOM05D007063 ORTHO05D008822 2.5e-64 250.8 251 52.6
CAN.G27.48 Capsicum annuum HOM05D007063 ORTHO05D008822 3.3e-64 250.4 194 59.3
Nitab4.5_0000408g0040 Nicotiana tabacum HOM05D007063 ORTHO05D008822 3.3e-64 250.4 238 52.9
BcaC05g24351 Brassica carinata HOM05D007063 ORTHO05D008822 4.3e-64 250.0 203 59.1
BolC5t29181H Brassica oleracea HOM05D007063 ORTHO05D008822 4.3e-64 250.0 203 59.1
AUR62026294 Chenopodium quinoa HOM05D007063 ORTHO05D008822 4.3e-64 250.0 270 48.9
AL1G15570 Arabidopsis lyrata HOM05D007063 ORTHO05D008822 1.3e-63 248.4 204 58.8
BcaB02g06831 Brassica carinata HOM05D007063 ORTHO05D008822 1.3e-63 248.4 183 61.7
C05p04030 Brassica napus HOM05D007063 ORTHO05D008822 1.3e-63 248.4 203 58.6
PGSC0003DMG401022625 Solanum tuberosum HOM05D007063 ORTHO05D008822 1.6e-63 248.1 219 54.3
Aa31LG1G18980 Aethionema arabicum HOM05D000150 ORTHO05D000108 2.8e-63 247.3 192 61.5
Sopen05g002660 Solanum pennellii HOM05D007063 ORTHO05D008822 2.8e-63 247.3 228 52.2
A10p04430 Brassica napus HOM05D007063 ORTHO05D008822 3.7e-63 246.9 203 57.6
BraA10t42710Z Brassica rapa HOM05D007063 ORTHO05D008822 8.2e-63 245.7 203 57.1
MELO3C010126.2 Cucumis melo HOM05D007063 ORTHO05D008822 8.2e-63 245.7 251 52.2
AT1G05670 Arabidopsis thaliana HOM05D007063 ORTHO05D008822 1.8e-62 244.6 191 59.7
AUR62026486 Chenopodium quinoa HOM05D007063 ORTHO05D008822 4.1e-62 243.4 270 48.1
HanXRQChr12g0371111 Helianthus annuus HOM05D007063 ORTHO05D008822 6.9e-62 242.7 195 59.5
CARHR005190 Cardamine hirsuta HOM05D007063 ORTHO05D008822 1.5e-61 241.5 204 57.8
Nitab4.5_0001726g0080 Nicotiana tabacum HOM05D007063 ORTHO05D008822 3.4e-61 240.4 225 51.1
SGA_v2.0_scaffold166G38300 Striga asiatica HOM05D007063 ORTHO05D008822 2.5e-59 234.2 224 50.9
Ah.02g131890 Amaranthus hybridus HOM05D007063 ORTHO05D008822 3.2e-59 233.8 239 48.1
Lj4g0004753 Lotus japonicus HOM05D007063 ORTHO05D008822 4.2e-59 233.4 183 62.3
SHI15635 Sapria himalayana HOM05D007063 ORTHO05D008822 3.5e-58 230.3 190 56.8
Sed0009977 Sechium edule HOM05D007063 ORTHO05D008822 1.3e-57 228.4 190 54.7
ECA233G4853 Erigeron canadensis HOM05D007063 ORTHO05D008822 1.5e-56 224.9 244 46.3
Psat4g129080 Pisum sativum HOM05D007063 ORTHO05D008822 2.2e-55 221.1 193 54.4
MBI16_g31483_MAGBIO Magnolia biondii HOM05D007063 ORTHO05D008822 2.8e-55 220.7 240 48.3
GSVIVG01020108001 Vitis vinifera HOM05D007063 ORTHO05D008822 3.7e-55 220.3 276 47.5
TPR.G10111 Trifolium pratense HOM05D007063 ORTHO05D008822 8.2e-55 219.2 195 53.3
C07p01560 Brassica napus HOM05D007063 ORTHO05D008822 4.1e-54 216.9 150 64.7
Ca_25037_v3 Cicer arietinum L. HOM05D007063 ORTHO05D008822 7.7e-53 212.6 186 53.2
Ca_22836_v3 Cicer arietinum L. HOM05D007063 ORTHO05D008822 1.3e-52 211.8 200 51.5
CDE06G2628 Ceratophyllum demersum HOM05D007063 ORTHO05D008822 1.9e-51 208.0 227 46.7
Medtr8g105170 Medicago truncatula HOM05D007063 ORTHO05D008822 1.6e-50 204.9 193 49.7
ATR0751G129 Amborella trichopoda HOM05D007063 ORTHO05D008822 1.3e-44 185.3 192 48.4
Lalb_Chr05g0230141 Lupinus albus HOM05D007063 ORTHO05D008822 3.2e-43 180.6 182 51.1
TPR.G21860 Trifolium pratense HOM05D007063 ORTHO05D008822 7.9e-42 176.0 177 50.3
Atru.chr11.1883 Acer truncatum HOM05D007063 ORTHO05D008822 7.4e-40 169.5 132 67.4
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 1.5e-32 145.2 269 33.1
SEGI_23973 Sequoiadendron giganteum HOM05D007063 ORTHO05D008822 5.0e-28 130.2 189 37.6
BolC3t18582H Brassica oleracea HOM05D007063 ORTHO05D008822 4.2e-27 127.1 79 70.9
Gorai.002G000500 Gossypium raimondii HOM05D007063 ORTHO05D008822 5.5e-27 126.7 84 66.7
Actinidia19847 Actinidia chinensis HOM05D007063 ORTHO05D008822 1.3e-23 115.5 128 47.7
Glyma.18G128532 Glycine max HOM05D007063 ORTHO05D008822 2.8e-23 114.4 89 57.3
BcaC05g24348 Brassica carinata HOM05D007063 ORTHO05D008822 3.7e-23 114.0 76 69.7
C03p63300 Brassica napus HOM05D000336 ORTHO05D002301 2.4e-22 111.3 82 64.6
Aqoxy3G00599 Aquilegia oxysepala HOM05D007063 ORTHO05D008822 3.5e-21 107.5 88 53.4
Atru.BG.286.p Acer truncatum HOM05D007063 ORTHO05D008822 8.8e-17 92.8 67 59.7
vmacro22128 Vaccinium macrocarpon HOM05D007063 ORTHO05D008822 9.2e-14 82.8 105 45.7
BcaC05g24349 Brassica carinata HOM05D007063 ORTHO05D008822 5.9e-13 80.1 110 36.4
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 1.7e-12 78.6 163 30.7
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 2.1e-10 71.6 224 25.9
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 6.1e-10 70.1 138 31.9
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 8.0e-10 69.7 138 31.2
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 1.0e-09 69.3 170 28.8
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.8e-09 68.6 208 26.4
Sed0014874 Sechium edule HOM05D007496 ORTHO05D009479 1.8e-09 68.6 161 28.0
Sc03g0005490 Simmondsia chinensis HOM05D007496 ORTHO05D009479 2.3e-09 68.2 138 32.6
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 3.0e-09 67.8 173 27.7
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 5.2e-09 67.0 169 29.0
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 5.2e-09 67.0 166 29.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 6.8e-09 66.6 170 28.2
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 1.5e-08 65.5 169 29.0
QL03p041883 Quercus lobata HOM05D007496 ORTHO05D009479 3.4e-08 64.3 174 27.6
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 7.5e-08 63.2 171 26.3
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 7.5e-08 63.2 171 26.3
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 7.5e-08 63.2 188 24.5
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 9.8e-08 62.8 175 25.7
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 9.8e-08 62.8 134 27.6
Haze_01569 Corylus avellana HOM05D007496 ORTHO05D009479 9.8e-08 62.8 163 30.7
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.3e-07 62.4 239 23.4
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 1.7e-07 62.0 207 25.1
Cfa021290 Carpinus fangiana HOM05D007496 ORTHO05D009479 1.7e-07 62.0 163 30.7
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 1.7e-07 62.0 184 23.9
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 2.2e-07 61.6 173 27.2
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 2.2e-07 61.6 171 25.7
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 2.9e-07 61.2 167 26.3
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 2.9e-07 61.2 167 26.9
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 3.7e-07 60.8 146 32.9
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 3.7e-07 60.8 174 29.3
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 4.9e-07 60.5 184 23.9
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 4.9e-07 60.5 161 24.2
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 4.9e-07 60.5 182 22.0
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 4.9e-07 60.5 138 26.1
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 4.9e-07 60.5 204 23.0
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 6.4e-07 60.1 239 25.1
Sopen02g005740 Solanum pennellii HOM05D007496 ORTHO05D009479 6.4e-07 60.1 240 25.0
Nitab4.5_0002936g0010 Nicotiana tabacum HOM05D007496 ORTHO05D009479 8.3e-07 59.7 200 24.0
CSS0032839 Camellia sinensis var. sinensis HOM05D007063 ORTHO05D008822 1.1e-06 59.3 42 61.9
CSS0043069 Camellia sinensis var. sinensis HOM05D007063 ORTHO05D008822 1.1e-06 59.3 42 61.9
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 1.4e-06 58.9 151 30.5
FAN05G3453 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.4e-06 58.9 55 49.1
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 1.4e-06 58.9 140 26.4
VMungo0251G1188 Vigna mungo HOM05D007496 ORTHO05D009479 1.4e-06 58.9 176 30.1
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 1.8e-06 58.5 138 27.5
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 1.8e-06 58.5 164 23.8
Lsat_1_v5_gn_3_27601 Lactuca sativa HOM05D007496 ORTHO05D009479 2.4e-06 58.2 151 28.5
MD13G1010200 Malus domestica HOM05D007496 ORTHO05D009479 2.4e-06 58.2 158 29.7
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 2.4e-06 58.2 138 26.8
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 3.2e-06 57.8 177 27.1
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 3.2e-06 57.8 138 26.8
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 4.1e-06 57.4 175 24.6
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 7.0e-06 56.6 132 28.0
Actinidia38410 Actinidia chinensis HOM05D007496 ORTHO05D009479 9.2e-06 56.2 138 29.7
Solyc02g021270.3 Solanum lycopersicum HOM05D007496 ORTHO05D009479 9.2e-06 56.2 240 24.2
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 9.2e-06 56.2 118 31.4
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 9.2e-06 56.2 138 30.4


User provided reference genes

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