Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.0e-58 229.9 124 100.0
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 8.2e-56 220.3 124 96.0
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 8.2e-48 193.7 122 86.1
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.4e-47 193.0 122 86.1
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.9e-46 187.6 122 82.0
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.0e-45 186.8 124 83.1
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 5.0e-45 184.5 126 80.2
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 2.7e-43 178.7 124 81.5
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 4.6e-43 177.9 118 83.9
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 4.8e-40 167.9 126 76.2
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 3.1e-39 165.2 126 74.6
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.1e-39 164.9 126 76.2
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.3e-39 164.5 124 73.4
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 9.1e-39 163.7 126 74.6
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.2e-38 163.3 126 75.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-38 162.5 126 73.0
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 5.0e-37 157.9 123 73.2
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 5.0e-37 157.9 124 71.8
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 5.5e-36 154.5 126 68.3
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 7.2e-36 154.1 121 72.7
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.6e-35 152.9 124 69.4
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 3.6e-35 151.8 126 67.5
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.6e-35 151.8 123 69.9
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.7e-35 151.4 125 69.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.3e-34 149.1 124 66.9
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.3e-34 149.1 127 67.7
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 6.7e-34 147.5 124 64.5
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 6.7e-34 147.5 127 66.9
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.1e-33 146.7 120 67.5
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 2.6e-33 145.6 123 64.2
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-33 144.8 123 63.4
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.7e-33 144.4 123 63.4
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.7e-33 144.4 123 63.4
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 5.7e-33 144.4 120 67.5
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 9.7e-33 143.7 126 65.9
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 9.7e-33 143.7 124 62.9
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.7e-33 143.7 124 62.9
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.7e-33 143.7 123 63.4
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.3e-32 143.3 124 65.3
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.3e-32 143.3 129 64.3
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-32 142.9 124 62.9
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.7e-32 142.9 123 67.5
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.8e-32 142.1 102 71.6
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-32 142.1 123 63.4
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.8e-32 141.4 123 64.2
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.8e-32 141.4 123 62.6
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.3e-32 141.0 96 74.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.3e-32 141.0 123 62.6
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 62.6
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 62.6
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.8e-31 139.4 127 62.2
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.8e-31 139.4 128 66.4
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.4e-31 139.0 126 66.7
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.4e-31 139.0 124 62.1
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 5.3e-31 137.9 125 64.8
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 5.3e-31 137.9 126 61.1
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 5.3e-31 137.9 125 63.2
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 7.0e-31 137.5 100 73.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 9.1e-31 137.1 124 64.5
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 9.1e-31 137.1 124 60.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 9.1e-31 137.1 127 64.6
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.5e-30 135.2 128 62.5
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 5.0e-29 131.3 126 61.1
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 5.0e-29 131.3 125 60.8
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 62.1
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.5e-28 129.8 131 59.5
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.5e-28 129.8 125 60.0
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.5e-28 129.8 119 62.2
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.5e-28 129.0 128 58.6
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.5e-28 129.0 124 58.1
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.5e-28 129.0 125 63.2
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.5e-28 129.0 124 59.7
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 3.2e-28 128.6 114 64.9
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 4.2e-28 128.3 123 61.8
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 4.2e-28 128.3 129 60.5
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 5.5e-28 127.9 126 62.7
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 7.2e-28 127.5 127 62.2
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 7.2e-28 127.5 126 61.9
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.2e-28 127.5 128 57.8
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.6e-27 126.3 122 62.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.1e-27 125.9 126 61.1
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 2.7e-27 125.6 122 60.7
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 3.6e-27 125.2 126 59.5
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 4.7e-27 124.8 127 59.1
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 4.7e-27 124.8 127 59.1
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 4.7e-27 124.8 127 59.1
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.1e-27 124.4 126 58.7
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 8.0e-27 124.0 123 57.7
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 8.0e-27 124.0 127 59.8
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.0e-26 123.6 121 60.3
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.0e-26 123.6 126 57.1
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.0e-26 123.6 120 56.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.0e-26 123.6 125 60.8
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.0e-26 123.6 124 57.3
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.8e-26 122.9 91 73.6
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 2.3e-26 122.5 124 57.3
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 2.3e-26 122.5 127 59.8
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.0e-26 122.1 127 55.9
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 5.2e-26 121.3 122 58.2
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 5.2e-26 121.3 126 58.7
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 6.7e-26 120.9 127 55.1
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 56.2
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.0e-25 119.4 126 55.6
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.6e-25 119.0 123 58.5
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.6e-25 119.0 127 55.9
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 2.6e-25 119.0 124 59.7
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 125 57.6
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 3.3e-25 118.6 127 55.9
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 3.3e-25 118.6 128 57.8
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.4e-25 118.2 127 58.3
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.4e-25 118.2 129 58.1
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 5.7e-25 117.9 126 57.1
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 7.5e-25 117.5 127 55.1
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 7.5e-25 117.5 108 60.2
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 7.5e-25 117.5 126 57.1
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 9.7e-25 117.1 123 58.5
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.0
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.0
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.0
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.0
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.0
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.3e-24 116.7 126 54.0
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 125 56.8
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.2e-24 115.9 124 58.1
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 2.8e-24 115.5 125 58.4
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.8e-24 115.5 123 61.0
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.8e-24 115.5 125 56.8
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-24 115.2 100 60.0
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 4.8e-24 114.8 126 56.3
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 4.8e-24 114.8 127 55.9
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 8.2e-24 114.0 124 52.4
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.4e-23 113.2 125 56.8
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.8e-23 112.8 100 65.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.8e-23 112.8 122 56.6
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.4e-23 112.5 128 53.9
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 9.1e-23 110.5 128 50.8
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.2e-22 110.2 118 56.8
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 128 53.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.6e-22 109.8 125 56.0
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 1.3e-21 106.7 125 53.6
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.7e-21 106.3 120 52.5
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.2e-21 105.9 130 50.8
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.1e-20 103.6 125 55.2
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 7.2e-20 100.9 124 49.2
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-19 99.8 132 50.8
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 4.7e-19 98.2 124 50.0
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.3e-18 95.9 123 54.5
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 2.8e-16 89.0 121 46.3
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 3.1e-15 85.5 73 64.4
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 7.0e-15 84.3 124 44.4
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.7e-14 82.4 103 49.5
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.5e-14 81.6 105 50.5
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 7.7e-14 80.9 128 38.3
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 7.7e-14 80.9 125 37.6
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 1.7e-13 79.7 53 75.5
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.2e-13 79.3 89 46.1
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 8.5e-13 77.4 50 78.0
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 4.2e-12 75.1 108 46.3
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 9.4e-12 73.9 128 40.6
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 9.4e-12 73.9 71 59.2
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 2.1e-11 72.8 118 38.1
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 6.1e-11 71.2 122 39.3
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 4.5e-06 55.1 116 39.7


User provided reference genes

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