Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.5e-113 412.9 211 100.0
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.1e-108 394.8 207 97.1
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.6e-107 392.9 207 96.6
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.6e-107 392.9 207 96.6
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.9e-107 391.0 207 95.2
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 7.8e-107 390.6 207 95.2
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.0e-106 390.2 207 95.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.3e-106 389.8 207 95.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.7e-106 389.4 207 95.2
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.3e-106 389.0 207 94.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 5.0e-106 387.9 207 94.2
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 6.6e-106 387.5 207 94.2
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.6e-106 387.1 207 94.7
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.6e-106 387.1 207 94.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.9e-105 386.0 207 94.2
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.3e-105 385.2 207 93.7
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 5.6e-105 384.4 207 93.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.6e-105 384.4 207 94.2
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 7.3e-105 384.0 206 93.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 7.3e-105 384.0 206 93.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 7.3e-105 384.0 207 94.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 7.3e-105 384.0 207 94.2
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.1e-104 382.5 206 93.7
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.8e-104 382.1 207 93.2
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.8e-104 382.1 207 94.2
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.6e-104 381.7 207 92.3
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 4.7e-104 381.3 207 92.3
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.4e-103 379.8 207 91.8
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-103 379.4 207 92.3
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.8e-103 379.4 207 92.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.3e-103 379.0 206 92.7
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.0e-103 378.3 207 91.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 5.2e-103 377.9 206 92.2
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 5.2e-103 377.9 207 92.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 6.8e-103 377.5 207 90.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 8.9e-103 377.1 207 91.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.9e-103 377.1 207 91.8
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.2e-102 376.7 207 90.8
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.2e-102 376.7 207 91.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 91.7
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.0e-102 375.9 207 91.3
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 2.6e-102 375.6 207 91.8
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.6e-102 375.6 206 91.7
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.6e-102 375.6 204 91.2
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 3.4e-102 375.2 206 91.7
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.4e-102 375.2 207 91.3
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.4e-102 374.8 207 90.3
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 5.8e-102 374.4 210 91.0
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.8e-102 374.4 212 90.1
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 7.5e-102 374.0 204 90.7
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 7.5e-102 374.0 206 91.7
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.3e-101 373.2 207 89.9
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.7e-101 372.9 207 89.9
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.2e-101 372.5 207 89.9
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.9e-101 372.1 207 89.9
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.9e-101 371.3 207 89.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 6.4e-101 370.9 206 89.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 8.3e-101 370.5 207 89.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.4e-100 369.8 206 88.8
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 4.1e-100 368.2 207 89.4
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 5.4e-100 367.9 207 87.9
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 89.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 89.4
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 5.4e-100 367.9 204 89.7
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 9.2e-100 367.1 207 89.9
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.6e-99 366.3 208 88.9
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.6e-99 366.3 217 86.6
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.0e-99 365.9 203 90.1
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 2.0e-99 365.9 206 88.3
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.0e-99 365.9 207 89.4
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 2.7e-99 365.5 207 87.9
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 4.6e-99 364.8 208 88.5
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 4.6e-99 364.8 207 89.4
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 4.6e-99 364.8 207 87.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 4.6e-99 364.8 207 89.9
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 6.0e-99 364.4 208 88.5
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 6.0e-99 364.4 208 88.5
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 6.0e-99 364.4 207 87.9
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 6.0e-99 364.4 203 90.1
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 6.0e-99 364.4 207 88.9
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 6.0e-99 364.4 207 88.9
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.7e-98 362.8 203 89.2
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.7e-98 362.8 207 87.4
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 3.0e-98 362.1 203 89.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 5.0e-98 361.3 207 90.3
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 8.6e-98 360.5 207 90.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.1e-97 360.1 207 86.5
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 87.5
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.3e-97 358.6 208 87.5
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 4.3e-97 358.2 208 87.0
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.6e-96 356.3 207 85.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.1e-96 355.9 207 87.9
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 86.1
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 6.2e-96 354.4 196 91.8
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.1e-95 353.6 207 83.6
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.4e-95 353.2 207 83.1
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.8e-95 352.8 207 83.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.4e-94 348.2 204 86.3
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.4e-94 348.2 204 86.3
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-93 346.3 204 85.8
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 3.2e-92 342.0 208 84.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.6e-91 339.7 204 83.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.5e-91 338.6 177 94.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.5e-91 338.6 207 85.0
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 6.0e-91 337.8 178 94.4
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 3.3e-89 332.0 178 92.1
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 4.3e-89 331.6 178 93.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.1e-88 329.3 206 84.0
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.3e-87 325.9 207 75.4
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.6e-86 322.4 178 88.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.3e-85 320.1 177 88.7
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.9e-85 318.9 205 82.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 4.9e-85 318.2 190 84.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.6e-83 313.2 207 80.2
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 8.9e-79 297.4 203 76.8
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 4.4e-78 295.0 167 86.8
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 3.2e-76 288.9 155 91.6
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 7.1e-76 287.7 154 92.9
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.7e-75 285.8 207 73.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.9e-68 263.1 232 63.8
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 2.1e-67 259.6 202 62.9
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.0e-66 255.8 203 61.6
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.3e-65 251.1 206 66.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 9.6e-65 250.8 200 59.0
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 8.1e-64 247.7 161 80.7
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.1e-63 247.3 199 61.8
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.8e-58 229.9 119 93.3
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.5e-57 226.1 201 53.7
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.4e-55 219.5 133 87.2
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 6.5e-53 211.5 201 53.7
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.1e-52 208.0 148 72.3
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.6e-51 205.3 150 72.7
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.3e-50 203.8 207 52.2
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.6e-48 196.8 200 48.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.8e-47 193.4 208 55.3
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 3.1e-47 192.6 196 47.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 2.3e-42 176.4 231 43.7
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 3.3e-41 172.6 98 85.7
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 5.7e-41 171.8 160 63.1
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 5.0e-37 158.7 207 47.3
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.5e-33 147.1 206 46.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-31 140.2 95 77.9
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-31 139.4 99 73.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.5e-30 137.1 187 39.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.2e-27 127.5 74 86.5
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 2.1e-27 126.7 135 56.3
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.7e-27 126.3 92 70.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.0e-26 122.9 83 74.7
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-25 120.6 59 91.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 7.0e-23 111.7 73 79.5
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.5e-22 109.4 82 67.1
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 5.9e-22 108.6 60 88.3
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.6e-14 83.2 65 63.1
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.0e-10 71.2 83 55.4
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.8e-08 63.2 39 74.4
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.1e-07 61.2 38 73.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 5.4e-07 58.9 47 72.3
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 9.1e-07 58.2 137 25.5


User provided reference genes

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