Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.1e-71 273.1 130 100.0
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.3e-15 84.3 48 83.3
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 9.6e-15 84.0 55 76.4
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.6e-14 83.2 55 78.2
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.6e-14 83.2 55 78.2
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-14 83.2 55 78.2
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 1.6e-14 83.2 44 88.6
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.1e-14 82.8 44 88.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 2.1e-14 82.8 44 86.4
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.8e-14 82.4 55 74.5
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.6e-14 82.0 48 77.1
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.6e-14 82.0 44 84.1
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.6e-14 82.0 55 72.7
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 8.1e-14 80.9 78 59.0
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.1e-13 80.5 55 74.5
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.1e-13 80.5 47 80.9
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.4e-13 80.1 44 86.4
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.4e-13 80.1 44 86.4
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.4e-13 80.1 44 86.4
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.4e-13 80.1 44 86.4
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.4e-13 80.1 45 84.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.4e-13 80.1 45 84.4
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.4e-13 80.1 44 86.4
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 72.7
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 74.5
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.4e-13 80.1 55 72.7
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.8e-13 79.7 55 72.7
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 74.5
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.8e-13 79.7 55 72.7
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 72.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 72.7
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 72.7
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 72.7
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 70.9
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.4e-13 79.3 55 72.7
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 2.4e-13 79.3 44 84.1
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 3.1e-13 79.0 55 70.9
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.1e-13 79.0 55 70.9
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 3.1e-13 79.0 44 84.1
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 3.1e-13 79.0 55 74.5
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 3.1e-13 79.0 55 74.5
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.1e-13 79.0 55 74.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.1e-13 79.0 55 74.5
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.1e-13 79.0 55 74.5
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.1e-13 79.0 44 81.8
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 4.0e-13 78.6 44 81.8
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.0e-13 78.6 55 72.7
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.0e-13 78.6 55 72.7
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 4.0e-13 78.6 55 70.9
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 4.0e-13 78.6 44 79.5
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 4.0e-13 78.6 55 70.9
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 4.0e-13 78.6 55 70.9
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 4.0e-13 78.6 55 70.9
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 5.3e-13 78.2 55 69.1
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 5.3e-13 78.2 55 69.1
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.3e-13 78.2 57 71.9
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 9.0e-13 77.4 55 70.9
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.2e-12 77.0 55 70.9
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.2e-12 77.0 55 70.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.2e-12 77.0 55 72.7
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-12 77.0 55 72.7
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.2e-12 77.0 55 72.7
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.2e-12 77.0 55 72.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 1.2e-12 77.0 55 69.1
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.5e-12 76.6 44 84.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 1.5e-12 76.6 55 70.9
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 1.5e-12 76.6 55 70.9
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-12 76.6 55 70.9
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 1.5e-12 76.6 55 70.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.5e-12 76.6 55 70.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.5e-12 76.6 55 70.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.5e-12 76.6 55 70.9
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 2.0e-12 76.3 44 81.8
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.0e-12 76.3 55 70.9
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.0e-12 76.3 121 42.1
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 2.0e-12 76.3 44 81.8
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.0e-12 76.3 44 81.8
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.0e-12 76.3 55 72.7
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 2.0e-12 76.3 55 72.7
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.0e-12 76.3 44 81.8
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 2.6e-12 75.9 45 77.8
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.6e-12 75.9 44 79.5
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.6e-12 75.9 44 79.5
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.6e-12 75.9 55 69.1
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.6e-12 75.9 44 79.5
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.6e-12 75.9 55 70.9
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 2.6e-12 75.9 55 70.9
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 2.6e-12 75.9 44 79.5
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-12 75.5 55 69.1
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-12 75.5 55 69.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-12 75.5 55 69.1
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 4.4e-12 75.1 55 69.1
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 5.8e-12 74.7 68 57.4
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.6e-12 74.3 44 77.3
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 9.9e-12 73.9 44 79.5
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 9.9e-12 73.9 44 77.3
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.9e-12 73.9 55 69.1
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.3e-11 73.6 44 77.3
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.7e-11 73.2 44 79.5
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.7e-11 73.2 44 81.8
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.9e-11 72.4 55 67.3
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-10 70.5 55 69.1
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 2.4e-10 69.3 44 63.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.4e-10 69.3 44 75.0
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 5.4e-10 68.2 44 72.7
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 5.1e-08 61.6 46 60.9
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.1e-07 60.5 30 90.0
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.6e-06 55.5 44 63.6


User provided reference genes

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