Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1855.1 920 100.0
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1569.3 838 92.5
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1505.3 838 88.5
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1499.2 838 88.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1497.3 838 88.3
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1453.0 837 85.1
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1452.2 838 84.2
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1443.7 838 84.1
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1428.7 838 83.4
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1428.3 840 83.8
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1422.9 838 83.3
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1415.6 838 83.8
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1413.7 838 83.5
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1412.5 838 83.4
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1408.7 838 83.4
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1406.0 839 81.9
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1394.4 838 82.1
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1391.3 838 81.4
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1390.6 868 80.4
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1389.8 838 82.6
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1389.8 838 82.6
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1389.4 839 81.8
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1389.0 838 81.5
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1387.1 840 81.7
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1385.5 839 81.8
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1384.4 830 82.5
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1384.4 838 80.8
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1380.9 840 81.4
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1379.0 838 80.4
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1378.6 858 80.8
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1378.2 838 80.7
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1378.2 839 80.6
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 826 82.0
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1372.8 838 82.7
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 838 80.9
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 915 76.2
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1370.1 845 79.3
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1367.1 838 80.3
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1363.6 838 80.4
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1362.4 839 79.1
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1358.2 838 79.2
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1357.8 839 80.3
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1355.9 838 79.0
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1354.3 838 79.5
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1353.2 839 78.8
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1352.8 838 78.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 838 79.5
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 838 79.4
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 838 78.8
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1349.7 838 78.6
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1349.7 838 78.4
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 839 79.9
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 838 78.4
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 839 79.4
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 845 78.3
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 839 79.4
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1346.3 838 78.9
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1344.3 838 78.0
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1343.2 839 78.9
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 845 78.0
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 845 78.0
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 838 78.6
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 839 78.4
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 967 71.4
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1337.8 911 73.2
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 858 78.0
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 838 79.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1333.2 844 79.0
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1332.4 845 78.2
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 838 77.6
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1330.5 840 78.2
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1330.5 849 78.6
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 870 76.7
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 838 78.9
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 841 77.2
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1308.9 904 73.5
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 843 75.8
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 911 72.8
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 821 78.4
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1292.7 838 77.3
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1287.7 826 77.0
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1285.0 824 77.9
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 781 79.3
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1275.8 867 74.6
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1263.8 842 75.4
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1257.7 788 79.1
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1255.4 764 80.1
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1248.4 765 79.2
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1247.6 751 81.9
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1244.2 766 78.9
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1231.5 842 74.5
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1228.8 776 78.5
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1219.9 839 74.1
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1182.5 858 67.9
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1178.7 839 69.2
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1170.6 693 83.1
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1162.9 823 69.9
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1162.9 748 75.7
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1152.5 844 67.4
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1147.5 838 70.2
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1136.7 697 79.8
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1114.8 839 67.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1110.1 854 65.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 6.3e-312 1073.5 848 64.5
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.2e-307 1058.9 654 79.1
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.9e-306 1055.8 839 63.3
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.7e-283 979.5 845 63.0
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.1e-258 897.1 642 71.5
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 5.5e-242 841.6 542 74.7
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.1e-226 790.8 513 75.4
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-208 731.1 418 85.6
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.1e-160 571.6 329 84.8
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 3.0e-123 447.2 300 78.3
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.6e-116 424.9 254 82.7
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.5e-111 407.1 307 65.1
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 5.6e-109 399.8 285 69.8
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 8.9e-99 365.9 194 92.3
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.7e-89 335.1 273 63.0
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 2.7e-87 327.8 388 49.7
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.7e-68 264.2 275 54.5
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.2e-66 259.2 182 72.5
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-51 209.5 139 75.5
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.6e-47 195.7 140 67.1
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.1e-43 183.0 117 77.8
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.4e-43 182.6 176 58.5
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 3.1e-35 154.8 94 79.8
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 9.1e-35 153.3 83 86.7
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 8.8e-30 136.7 103 65.0
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 2.6e-29 135.2 82 82.9
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.5e-24 119.4 76 73.7
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 3.2e-24 118.2 74 82.4
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.1e-23 115.5 84 70.2
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 5.7e-21 107.5 67 80.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 6.5e-17 94.0 68 66.2
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 5.5e-16 90.9 105 55.2
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 3.5e-10 71.6 52 65.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.5e-10 71.2 42 85.7
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 1.8e-06 59.3 85 36.5
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 8.9e-06 57.0 41 68.3


User provided reference genes

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