Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 2.0e-175 619.0 313 100.0
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 1.3e-153 546.6 296 92.6
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.8e-144 516.2 295 88.5
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 5.3e-144 514.6 295 88.1
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.2e-143 513.5 295 87.8
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.1e-133 480.3 296 79.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.9e-130 469.5 290 80.7
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.7e-129 466.5 297 77.8
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 8.2e-129 464.2 291 78.4
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.1e-128 463.8 293 77.8
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 9.1e-128 460.7 291 77.7
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.2e-127 460.3 291 78.7
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 7.7e-127 457.6 299 76.9
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 3.8e-126 455.3 294 76.9
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 5.5e-125 451.4 294 75.2
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 7.2e-125 451.1 305 74.8
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 3.6e-124 448.7 293 75.1
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.7e-124 448.4 295 77.6
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.0e-123 447.2 290 75.5
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 6.7e-123 444.5 293 74.4
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 2.0e-122 443.0 294 75.9
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 4.4e-122 441.8 295 73.9
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.3e-121 440.3 294 72.1
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.8e-121 439.1 294 75.2
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 3.7e-121 438.7 294 75.2
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 3.1e-120 435.6 297 73.4
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.3e-118 430.3 295 71.5
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.7e-118 429.9 301 71.1
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.7e-118 429.9 310 67.4
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 5.0e-118 428.3 295 70.8
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 8.5e-118 427.6 309 67.0
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.1e-117 427.2 295 70.5
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 1.4e-117 426.8 295 70.5
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 2.3e-115 419.5 299 68.6
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 2.0e-114 416.4 301 68.4
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 2.0e-114 416.4 301 68.4
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 2.0e-114 416.4 293 69.6
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 4.4e-114 415.2 309 67.6
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 4.4e-114 415.2 293 70.0
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.4e-114 415.2 321 68.2
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 7.4e-114 414.5 295 70.5
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 9.7e-114 414.1 292 69.5
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 1.4e-112 410.2 299 70.2
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 7.0e-112 407.9 295 68.8
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.6e-111 406.8 257 80.9
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 4.5e-111 405.2 291 71.5
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 7.7e-111 404.4 307 63.8
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.0e-110 404.1 292 70.2
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 1.3e-110 403.7 293 66.6
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 2.2e-110 402.9 296 65.5
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 6.5e-110 401.4 297 68.4
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 6.5e-110 401.4 293 68.3
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.5e-109 399.4 294 66.7
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 4.2e-109 398.7 270 73.7
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 5.5e-109 398.3 312 65.7
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 5.5e-109 398.3 290 70.0
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 9.4e-109 397.5 298 64.4
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.1e-108 396.4 291 70.1
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.6e-108 395.6 293 66.9
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 3.6e-108 395.6 304 67.4
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 8.0e-108 394.4 294 64.6
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 2.6e-106 389.4 273 70.0
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.7e-105 386.7 294 64.3
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 3.1e-104 382.5 361 56.8
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 7.0e-104 381.3 297 63.6
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 4.5e-103 378.6 294 65.3
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.0e-102 377.5 259 72.6
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 1.3e-102 377.1 297 63.6
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 5.0e-102 375.2 326 62.3
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 2.5e-101 372.9 294 61.6
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 9.4e-101 370.9 294 62.9
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 2.7e-100 369.4 238 74.4
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.7e-97 359.0 258 68.6
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 8.3e-97 357.8 299 60.5
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 3.1e-96 355.9 306 58.8
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 7.0e-96 354.8 292 63.4
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 1.3e-94 350.5 290 59.0
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 2.9e-94 349.4 282 59.9
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.0e-94 348.6 318 58.2
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.6e-92 343.6 273 64.8
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 3.0e-91 339.3 293 56.7
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 7.8e-87 324.7 227 70.9
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 3.3e-85 319.3 284 57.0
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 9.5e-85 317.8 209 72.7
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 6.1e-84 315.1 241 64.7
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 3.1e-83 312.8 212 71.7
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 9.8e-82 307.8 201 73.6
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 6.4e-81 305.1 231 67.5
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 9.5e-77 291.2 209 67.0
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.1e-75 287.7 286 55.6
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 4.0e-75 285.8 258 55.8
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 3.7e-73 279.3 293 49.5
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.6e-71 273.9 302 46.4
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.7e-71 273.1 186 71.0
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.0e-70 271.2 291 46.7
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.3e-70 270.8 200 66.0
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.1e-69 267.7 290 45.5
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 2.8e-68 263.1 293 53.2
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 3.7e-65 252.7 184 67.4
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 6.0e-63 245.4 202 59.9
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 6.0e-55 218.8 173 64.2
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 8.7e-54 214.9 190 60.0
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.9e-53 213.8 185 59.5
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.3e-53 213.0 208 52.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 6.9e-51 205.3 246 45.5
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 3.8e-41 172.9 124 64.5
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.9e-40 170.6 137 64.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.2e-39 167.9 329 32.8
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 2.8e-36 156.8 145 57.9
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.1e-35 154.8 95 84.2
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-34 151.4 96 77.1
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 2.2e-33 147.1 96 78.1
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.2e-32 142.9 122 60.7
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.1e-31 140.6 94 74.5
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 6.0e-31 139.0 97 70.1
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 3.7e-28 129.8 107 57.9
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 4.9e-25 119.4 100 60.0
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.1e-24 118.2 90 66.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.9e-24 117.5 122 51.6
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 9.3e-24 115.2 171 36.8
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 3.5e-23 113.2 93 58.1
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 1.5e-21 107.8 94 60.6
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-21 107.5 95 61.1
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 6.3e-20 102.4 81 60.5
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.4e-19 100.5 90 53.3
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-18 98.2 68 69.1
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.3e-17 94.7 214 30.4
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.4e-16 91.3 72 59.7
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-15 87.8 55 76.4
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 3.0e-14 83.6 59 71.2
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.4e-10 70.1 78 51.3
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 4.5e-10 69.7 52 63.5


User provided reference genes

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