Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 1.1e-131 473.4 246 100.0
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.6e-103 379.8 250 82.8
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.3e-100 370.2 248 81.0
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 1.3e-100 370.2 248 81.0
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 6.9e-99 364.4 249 81.1
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 4.5e-98 361.7 248 78.6
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.8e-97 358.6 207 89.4
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.6e-79 300.1 249 67.1
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 2.1e-79 299.7 246 68.3
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 4.0e-78 295.4 249 67.5
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 6.8e-78 294.7 252 66.3
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 8.8e-78 294.3 256 66.8
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 2.0e-77 293.1 247 66.0
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 2.2e-76 289.7 249 65.1
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 3.7e-76 288.9 253 66.8
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 1.6e-74 283.5 247 63.6
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 4.5e-74 282.0 246 65.9
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.0e-73 280.8 247 65.2
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 1.3e-73 280.4 248 63.7
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 5.0e-73 278.5 248 64.1
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 6.5e-73 278.1 249 64.7
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 8.5e-73 277.7 250 65.2
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 9.4e-72 274.2 253 62.5
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 1.2e-71 273.9 248 61.3
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 2.1e-71 273.1 249 61.0
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 8.0e-71 271.2 270 60.4
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.4e-70 270.4 266 61.3
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 1.5e-69 266.9 256 62.1
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 2.6e-69 266.2 254 59.8
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 7.5e-69 264.6 249 61.8
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 9.8e-69 264.2 250 62.0
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.3e-68 263.8 248 63.7
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.3e-68 263.8 248 63.7
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 3.7e-68 262.3 251 62.5
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 4.9e-68 261.9 258 62.0
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 1.8e-67 260.0 251 62.9
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 2.4e-67 259.6 246 62.6
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 2.4e-67 259.6 253 59.3
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 5.4e-67 258.5 246 59.8
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 7.7e-66 254.6 271 55.0
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 1.0e-65 254.2 211 67.8
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 1.7e-65 253.4 255 59.6
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.3e-65 253.1 250 61.2
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 3.8e-65 252.3 248 61.3
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 6.6e-65 251.5 250 62.0
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.1e-64 250.8 250 61.6
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 1.5e-64 250.4 250 61.6
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.5e-64 250.4 204 68.1
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.9e-64 250.0 253 57.7
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.5e-64 249.6 249 59.4
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 9.5e-64 247.7 251 59.0
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.6e-63 246.9 251 59.4
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 2.8e-63 246.1 252 58.7
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.4e-62 243.8 250 58.0
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 2.3e-62 243.0 252 59.5
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 3.0e-62 242.7 253 58.1
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 6.8e-62 241.5 249 59.4
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 8.9e-62 241.1 250 61.2
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.5e-61 240.4 250 57.2
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 3.4e-61 239.2 258 58.1
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 4.4e-61 238.8 250 59.2
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 9.8e-61 237.7 273 54.9
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 2.9e-60 236.1 250 57.6
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 4.1e-59 232.3 250 57.6
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 5.4e-59 231.9 250 57.6
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 2.0e-58 229.9 250 57.2
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.0e-58 229.9 249 57.0
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 3.5e-58 229.2 248 54.8
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 3.5e-58 229.2 182 69.8
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 5.9e-58 228.4 234 59.4
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 5.9e-58 228.4 250 56.8
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 7.8e-58 228.0 250 56.8
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 5.0e-57 225.3 187 65.2
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 8.6e-57 224.6 252 53.2
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.1e-56 224.2 250 54.4
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.5e-56 223.8 259 53.7
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 2.5e-56 223.0 250 55.2
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 7.3e-56 221.5 249 56.2
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 1.6e-55 220.3 254 55.9
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 2.1e-55 219.9 240 56.2
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.6e-55 219.2 260 54.6
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 4.7e-55 218.8 248 56.0
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 6.2e-55 218.4 251 53.8
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 8.0e-55 218.0 259 52.5
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 8.0e-55 218.0 296 49.3
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.0e-54 217.6 227 57.3
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-54 216.9 240 56.7
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-54 216.9 226 58.4
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 1.8e-54 216.9 250 52.8
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 3.1e-54 216.1 250 54.0
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 5.2e-54 215.3 240 56.2
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 6.8e-54 214.9 265 52.5
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 8.9e-54 214.5 258 52.3
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.2e-53 214.2 240 55.0
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 4.4e-53 212.2 246 56.5
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 2.2e-52 209.9 250 52.4
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 3.7e-52 209.1 281 51.2
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 1.4e-51 207.2 240 55.8
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.1e-51 205.7 213 58.2
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.7e-49 200.3 238 53.4
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.1e-48 197.6 150 73.3
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 9.5e-48 194.5 150 72.0
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.6e-47 193.7 248 52.8
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 4.7e-47 192.2 248 52.4
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 2.3e-46 189.9 259 50.6
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.1e-46 189.5 131 77.1
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 1.5e-45 187.2 136 75.0
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 5.8e-45 185.3 263 50.6
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 2.2e-44 183.3 252 49.6
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 4.9e-44 182.2 138 72.5
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 2.7e-42 176.4 266 47.0
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 1.3e-41 174.1 136 72.1
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.8e-39 166.4 121 75.2
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 1.1e-35 154.5 251 43.4
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 1.1e-35 154.5 264 42.8
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 4.6e-34 149.1 252 42.5
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 6.0e-34 148.7 135 62.2
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 1.3e-33 147.5 186 51.1
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 6.2e-31 138.7 261 42.9
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 2.4e-30 136.7 179 51.4
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 4.9e-28 129.0 179 48.6
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 1.7e-25 120.6 181 50.3
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 4.3e-24 115.9 73 79.5
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 6.2e-23 112.1 180 43.9
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 2.2e-20 103.6 74 73.0
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 2.9e-20 103.2 155 45.8
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 1.6e-15 87.4 228 31.6
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 2.4e-14 83.6 131 41.2
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 2.0e-13 80.5 102 50.0
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.7e-12 77.4 77 61.0
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 3.2e-11 73.2 58 62.1
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 1.2e-10 71.2 129 43.4
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 5.1e-09 65.9 160 36.9
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 8.7e-09 65.1 245 29.8
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 1.5e-08 64.3 142 39.4
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-08 64.3 119 41.2
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 4.3e-08 62.8 139 39.6
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 1.4e-06 57.8 76 47.4


User provided reference genes

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