Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 7.8e-165 583.9 345 100.0
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 4.5e-136 488.4 349 79.4
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.5e-131 473.4 354 83.9
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.6e-130 469.9 354 83.6
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 3.6e-125 452.2 350 80.3
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 2.2e-122 443.0 350 81.7
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.1e-121 440.7 353 80.7
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 3.2e-118 429.1 350 68.6
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 6.7e-116 421.4 352 69.9
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 1.5e-115 420.2 359 75.5
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 7.4e-115 417.9 351 75.2
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 2.8e-114 416.0 352 69.9
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 6.3e-114 414.8 355 67.6
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 3.4e-112 409.1 349 64.5
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 7.7e-112 407.9 351 65.2
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 1.4e-110 403.7 348 73.0
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 2.1e-109 399.8 355 66.2
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.0e-108 397.5 354 65.5
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 8.8e-108 394.4 361 63.2
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.0e-107 393.3 353 66.3
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 2.6e-107 392.9 355 62.3
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 2.6e-107 392.9 355 63.1
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 2.6e-107 392.9 355 63.1
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 6.3e-106 388.3 353 61.2
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 6.3e-106 388.3 359 64.6
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 6.3e-106 388.3 359 64.6
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.4e-105 387.1 354 68.9
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 3.1e-105 386.0 355 68.5
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 3.1e-105 386.0 357 63.9
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 4.1e-105 385.6 360 66.9
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 7.0e-105 384.8 354 67.5
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 9.1e-105 384.4 357 69.7
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 9.1e-105 384.4 350 72.6
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 4.5e-104 382.1 361 63.7
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 4.5e-104 382.1 352 67.9
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 4.5e-104 382.1 377 63.1
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 5.9e-104 381.7 357 65.0
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 2.5e-102 376.3 362 60.5
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 2.5e-102 376.3 360 62.8
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 5.5e-102 375.2 354 70.6
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 7.2e-102 374.8 363 62.8
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 9.4e-102 374.4 355 63.1
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.2e-101 374.0 359 59.9
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.6e-101 373.6 351 65.2
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 2.1e-101 373.2 358 62.8
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 2.1e-101 373.2 351 65.2
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 6.1e-101 371.7 353 62.3
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 1.8e-100 370.2 356 64.9
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 2.3e-100 369.8 355 66.8
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 3.0e-100 369.4 352 61.1
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 6.7e-100 368.2 352 62.8
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 8.8e-100 367.9 356 59.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.2e-99 367.5 363 60.9
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.2e-99 367.5 363 60.9
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 1.2e-99 367.5 360 63.1
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 2.6e-99 366.3 363 60.9
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.6e-99 366.3 363 60.9
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 4.4e-99 365.5 405 60.0
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 7.5e-99 364.8 371 62.5
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 3.7e-98 362.5 354 65.3
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 9.1e-97 357.8 362 69.6
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 2.7e-96 356.3 349 61.9
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 5.9e-96 355.1 360 62.5
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 5.9e-96 355.1 353 68.3
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 2.5e-94 349.7 357 58.3
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 2.1e-93 346.7 295 70.5
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 3.6e-93 345.9 347 63.7
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 6.1e-93 345.1 353 59.2
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 6.1e-93 345.1 294 70.1
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.8e-92 343.6 353 62.0
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 4.0e-92 342.4 362 63.0
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 1.7e-90 337.0 353 55.8
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 4.8e-90 335.5 333 61.9
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 3.1e-89 332.8 362 60.8
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 9.1e-89 331.3 352 58.2
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 9.1e-89 331.3 361 58.7
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 2.7e-88 329.7 364 62.6
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.7e-87 327.0 350 58.0
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.7e-87 327.0 196 82.1
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.9e-87 326.2 357 59.1
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 7.2e-86 321.6 350 58.0
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 2.8e-85 319.7 279 63.1
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 8.0e-85 318.2 364 59.3
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 3.0e-84 316.2 368 64.4
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 6.8e-84 315.1 366 60.9
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 6.8e-84 315.1 430 51.9
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 2.6e-83 313.2 352 56.2
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 4.4e-83 312.4 193 80.3
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 5.7e-83 312.0 241 68.5
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 1.8e-81 307.0 247 74.5
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 4.1e-81 305.8 364 52.5
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.6e-80 303.9 352 57.1
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 3.8e-79 299.3 356 50.8
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 5.6e-78 295.4 393 56.7
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 2.8e-77 293.1 337 59.3
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 9.8e-75 284.6 286 65.0
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.9e-74 283.1 289 65.1
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 4.1e-73 279.3 287 60.6
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 3.0e-71 273.1 244 65.2
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 8.6e-71 271.6 350 51.1
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.3e-68 263.5 283 71.4
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 3.4e-67 259.6 281 59.1
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 3.2e-65 253.1 233 57.5
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 4.7e-61 239.2 201 62.2
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 7.1e-57 225.3 241 60.2
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 2.9e-50 203.4 237 45.6
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 2.9e-50 203.4 233 46.4
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 1.7e-47 194.1 170 55.3
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 3.6e-45 186.4 250 43.6
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 4.0e-44 183.0 189 49.2
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.0e-23 115.2 82 68.3
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 3.1e-20 103.6 126 42.9
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.3e-18 98.2 61 85.2
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 2.9e-18 97.1 129 41.1
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 6.5e-18 95.9 189 34.4
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 8.4e-18 95.5 186 32.8
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 3.9e-15 86.7 52 86.5
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 3.3e-14 83.6 72 59.7
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 6.5e-10 69.3 44 65.9
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 1.5e-06 58.2 200 44.5
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 4.3e-06 56.6 77 41.6


User provided reference genes

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