Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib235G1505 Durio zibethinus HOM05D008314 ORTHO05D010369 1.3e-42 176.0 89 100.0
Thecc.06G129300 Theobroma cacao HOM05D008314 ORTHO05D010369 1.0e-28 129.8 84 78.6
Thecc.03G325500 Theobroma cacao HOM05D008314 ORTHO05D010369 3.0e-28 128.3 85 78.8
Duzib160G0571 Durio zibethinus HOM05D008314 ORTHO05D010369 1.0e-23 113.2 84 70.2
Duzib160G0115 Durio zibethinus HOM05D008314 ORTHO05D010369 2.2e-23 112.1 83 71.1
Gohir.D06G149000 Gossypium hirsutum HOM05D008314 ORTHO05D010369 8.5e-23 110.2 86 62.8
Gorai.010G173500 Gossypium raimondii HOM05D008314 ORTHO05D010369 7.2e-22 107.1 88 62.5
Gohir.A06G143350 Gossypium hirsutum HOM05D008314 ORTHO05D010369 6.1e-21 104.0 83 61.4
QL05p001376 Quercus lobata HOM05D008314 ORTHO05D010369 1.2e-19 99.8 84 59.5
Atru.chr1.4110 Acer truncatum HOM05D008314 ORTHO05D010369 5.7e-19 97.4 86 62.8
Manes.11G013300 Manihot esculenta HOM05D008314 ORTHO05D010369 3.1e-17 91.7 85 56.5
Potri.003G072000 Populus trichocarpa HOM05D008314 ORTHO05D010369 1.2e-16 89.7 86 54.7
COL.COLO4_30857 Corchorus olitorius HOM05D008314 ORTHO05D010369 1.6e-16 89.4 63 73.0
TWI14G0587 Tripterygium wilfordii HOM05D008314 ORTHO05D010369 1.6e-16 89.4 87 49.4
FvH4_6g35740 Fragaria vesca HOM05D008314 ORTHO05D010369 2.7e-16 88.6 95 53.7
FAN05G1710 Fragaria x ananassa HOM05D008314 ORTHO05D010369 3.5e-16 88.2 95 52.6
SalBow6G0833 Salvia bowleyana HOM05D008314 ORTHO05D010369 3.5e-16 88.2 79 55.7
Cpa.g.sc25.184 Carica papaya HOM05D008314 ORTHO05D010369 4.5e-16 87.8 77 59.7
CiPaw.01G212000 Carya illinoinensis HOM05D008314 ORTHO05D010369 4.5e-16 87.8 86 55.8
Cc04_g00790 Coffea canephora HOM05D008314 ORTHO05D010369 4.5e-16 87.8 79 55.7
FAN09G4263 Fragaria x ananassa HOM05D008314 ORTHO05D010369 5.9e-16 87.4 95 52.6
CSS0041009 Camellia sinensis var. sinensis HOM05D008314 ORTHO05D010369 7.7e-16 87.0 85 51.8
Ciclev10026853m.g Citrus clementina HOM05D008314 ORTHO05D010369 1.0e-15 86.7 85 58.8
Nn6g35721 Nelumbo nucifera HOM05D008314 ORTHO05D010369 1.3e-15 86.3 91 54.9
RcHm_v2.0_Chr2g0147741 Rosa chinensis HOM05D008314 ORTHO05D010369 1.3e-15 86.3 93 52.7
Dinv37824 Davidia involucrata HOM05D008314 ORTHO05D010369 2.3e-15 85.5 88 55.7
Rhsim12G0213100 Rhododendron simsii HOM05D008314 ORTHO05D010369 2.3e-15 85.5 92 50.0
MBI13_g01687_MAGBIO Magnolia biondii HOM05D008314 ORTHO05D010369 5.0e-15 84.3 78 53.8
Oeu008398.2 Olea europaea HOM05D008314 ORTHO05D010369 8.6e-15 83.6 85 55.3
TAR070G0001 Trochodendron aralioides HOM05D008314 ORTHO05D010369 8.6e-15 83.6 77 54.5
FAN02G2954 Fragaria x ananassa HOM05D008314 ORTHO05D010369 1.5e-14 82.8 95 46.3
MELO3C024311.2 Cucumis melo HOM05D008314 ORTHO05D010369 7.2e-14 80.5 88 47.7
Prupe.3G031600 Prunus persica HOM05D008314 ORTHO05D010369 9.5e-14 80.1 96 47.9
Ciclev10027008m.g Citrus clementina HOM05D008314 ORTHO05D010369 1.6e-13 79.3 91 50.5
CsaV3_7G033990 Cucumis sativus L. HOM05D008314 ORTHO05D010369 1.6e-13 79.3 73 52.1
ClCG09G001340 Citrullus lanatus HOM05D008314 ORTHO05D010369 2.1e-13 79.0 93 47.3
Actinidia24433 Actinidia chinensis HOM05D008314 ORTHO05D010369 3.6e-13 78.2 88 53.4
Oeu059021.1 Olea europaea HOM05D008314 ORTHO05D010369 4.7e-13 77.8 85 52.9
Sed0005090 Sechium edule HOM05D008314 ORTHO05D010369 8.0e-13 77.0 89 49.4
ATR0099G003 Amborella trichopoda HOM05D008314 ORTHO05D010369 1.0e-12 76.6 84 51.2
Glyma.16G013200 Glycine max HOM05D008314 ORTHO05D010369 5.2e-12 74.3 74 48.6
Medtr8g022990 Medicago truncatula HOM05D008314 ORTHO05D010369 1.5e-11 72.8 70 50.0
PSO135G0082 Papaver somniferum HOM05D008314 ORTHO05D010369 2.6e-11 72.0 74 48.6
PSO724G1385 Papaver somniferum HOM05D008314 ORTHO05D010369 2.6e-11 72.0 76 50.0
Lalb_Chr17g0343301 Lupinus albus HOM05D008314 ORTHO05D010369 5.7e-11 70.9 74 48.6
MD09G1173500 Malus domestica HOM05D008314 ORTHO05D010369 5.7e-11 70.9 97 45.4
Phvul.010G123800 Phaseolus vulgaris HOM05D008314 ORTHO05D010369 5.7e-11 70.9 81 48.1
Rhsim08G0244000 Rhododendron simsii HOM05D008314 ORTHO05D010369 4.9e-10 67.8 98 38.8
CiPaw.01G212100 Carya illinoinensis HOM05D008314 ORTHO05D010369 6.3e-10 67.4 90 45.6
Os02g0564600 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 8.3e-10 67.0 36 75.0
arahy.Tifrunner.gnm1.ann1.K03VIU Arachis hypogaea HOM05D008314 ORTHO05D010369 5.4e-09 64.3 90 37.8
arahy.Tifrunner.gnm1.ann1.0KI29H Arachis hypogaea HOM05D008314 ORTHO05D010369 7.0e-09 63.9 90 37.8
AUR62001414 Chenopodium quinoa HOM05D008314 ORTHO05D010369 7.0e-09 63.9 42 59.5
Psat4g165800 Pisum sativum HOM05D008314 ORTHO05D010369 7.0e-09 63.9 33 72.7
SEGI_28829 Sequoiadendron giganteum HOM05D008314 ORTHO05D010369 9.2e-09 63.5 39 66.7
Oeu059020.1 Olea europaea HOM05D008314 ORTHO05D010369 2.0e-08 62.4 37 73.0
AUR62025623 Chenopodium quinoa HOM05D008314 ORTHO05D010369 5.9e-08 60.8 39 61.5
SEGI_18497 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 1.5e-06 56.2 31 67.7
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 3.3e-06 55.1 42 59.5
Os03g0400700 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 4.3e-06 54.7 56 41.1
Zm00001eb019440 Zea mays HOM05D008314 ORTHO05D010369 4.3e-06 54.7 77 40.3
Zm00001eb182560 Zea mays HOM05D008314 ORTHO05D010369 4.3e-06 54.7 40 55.0
SEGI_24113 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 7.3e-06 53.9 36 55.6
vmacro02442 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 7.3e-06 53.9 76 39.5


User provided reference genes

Program Settings