Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 5.3e-108 394.4 208 100.0
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.5e-65 251.5 138 97.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.1e-64 249.6 138 96.4
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.1e-64 249.6 138 96.4
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 6.1e-64 248.1 138 95.7
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.0e-63 247.3 138 95.7
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.4e-62 241.9 138 92.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 5.7e-62 241.5 139 94.2
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.7e-61 240.0 138 90.6
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.2e-61 239.6 138 92.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 6.3e-61 238.0 140 91.4
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 3.1e-60 235.7 140 90.7
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.0e-60 234.6 139 91.4
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.2e-60 234.2 138 89.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.2e-59 233.8 138 89.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.6e-59 233.4 139 91.4
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.0e-59 233.0 139 90.6
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.7e-59 232.6 138 89.1
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 4.5e-59 231.9 139 89.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.9e-59 231.5 138 89.1
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.9e-59 231.5 139 89.9
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 7.8e-59 231.1 138 87.7
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.3e-58 230.3 139 89.2
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.3e-58 229.6 139 89.2
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 2.9e-58 229.2 141 87.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.8e-58 228.8 143 87.4
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 6.6e-58 228.0 138 89.1
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.5e-57 226.1 138 86.2
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 3.3e-57 225.7 139 85.6
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 4.3e-57 225.3 137 86.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 7.3e-57 224.6 139 87.1
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.5e-57 224.2 142 82.4
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.2e-56 223.8 139 87.8
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.2e-56 223.8 137 86.1
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.6e-56 223.4 137 86.1
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-56 223.4 138 84.8
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.6e-56 223.4 138 84.8
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.8e-56 222.6 141 85.8
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.8e-56 222.6 139 86.3
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.8e-56 222.6 139 87.1
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.8e-56 222.6 140 83.6
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.6e-56 222.2 139 86.3
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 3.6e-56 222.2 141 85.1
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 3.6e-56 222.2 139 86.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 4.7e-56 221.9 139 85.6
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 4.7e-56 221.9 140 84.3
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 6.1e-56 221.5 138 84.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 8.0e-56 221.1 138 84.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 8.0e-56 221.1 140 85.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.0e-55 220.7 138 86.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.0e-55 220.7 138 85.5
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.4e-55 220.3 137 85.4
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.4e-55 220.3 142 81.7
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.4e-55 220.3 138 85.5
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.8e-55 219.9 137 85.4
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.3e-55 219.5 138 83.3
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.1e-55 219.2 138 83.3
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 3.1e-55 219.2 138 85.5
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.2e-55 218.4 138 82.6
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 5.2e-55 218.4 142 83.1
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 6.8e-55 218.0 140 84.3
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 6.8e-55 218.0 140 84.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 8.9e-55 217.6 141 83.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 8.9e-55 217.6 137 84.7
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.2e-54 217.2 143 82.5
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.5e-54 216.9 143 80.4
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 2.0e-54 216.5 138 84.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.6e-54 216.1 143 81.8
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 3.4e-54 215.7 137 83.9
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-53 213.8 139 83.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-53 213.8 139 83.5
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.7e-53 213.4 140 81.4
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.7e-53 213.4 140 81.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.2e-53 213.0 140 81.4
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.2e-53 213.0 167 73.1
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.9e-53 212.6 141 80.9
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.1e-52 210.7 140 81.4
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.4e-52 210.3 140 80.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 2.4e-52 209.5 147 77.6
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.4e-52 209.5 138 81.2
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 5.4e-52 208.4 141 83.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.4e-52 208.4 141 80.1
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.0e-52 208.0 138 81.2
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-51 206.8 151 76.2
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.6e-51 206.8 151 76.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.7e-51 206.1 148 78.4
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 3.5e-51 205.7 149 76.5
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.8e-51 204.5 152 75.0
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.7e-50 203.4 172 67.4
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.3e-50 203.0 138 79.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.0e-50 201.8 160 70.6
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.1e-49 200.7 140 78.6
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.5e-49 199.5 144 75.7
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.3e-49 199.1 140 77.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 9.5e-49 197.6 149 73.2
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-48 197.2 144 74.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.6e-48 196.8 152 73.0
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 3.6e-48 195.7 155 71.6
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 3.6e-48 195.7 155 71.6
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.7e-48 195.3 141 77.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 4.7e-48 195.3 138 75.4
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 8.0e-48 194.5 146 74.0
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.8e-47 193.4 176 64.8
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.8e-47 193.4 148 72.3
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 8.9e-47 191.0 169 63.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.2e-46 190.7 112 90.2
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.4e-46 189.1 115 88.7
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 4.4e-46 188.7 134 77.6
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.9e-45 185.3 136 75.7
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.1e-44 184.1 136 72.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 5.4e-44 181.8 134 76.1
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.2e-43 180.6 114 83.3
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.9e-42 175.6 112 84.8
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.3e-41 172.6 115 80.0
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 4.3e-41 172.2 166 59.0
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.1e-40 169.9 138 63.8
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.4e-39 167.2 113 80.5
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.2e-38 164.1 139 66.2
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.2e-38 164.1 119 77.3
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.0e-38 163.3 126 76.2
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 4.1e-36 155.6 134 67.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 4.6e-35 152.1 134 67.9
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 7.8e-35 151.4 137 65.7
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 5.1e-34 148.7 136 58.8
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.1e-33 147.5 131 65.6
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 7.3e-33 144.8 97 79.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.1e-32 143.3 168 53.6
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 6.2e-32 141.7 108 73.1
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 6.8e-31 138.3 118 64.4
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.9e-31 137.9 81 95.1
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.4e-30 135.6 155 54.8
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.4e-29 131.7 80 91.2
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.4e-29 131.3 80 91.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.9e-28 130.2 135 55.6
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 3.2e-28 129.4 138 57.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.2e-28 129.0 77 93.5
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.6e-27 127.1 85 81.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.7e-27 126.3 80 87.5
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 4.6e-27 125.6 114 64.9
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.6e-27 125.6 76 92.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 2.3e-26 123.2 85 78.8
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 4.3e-25 119.0 163 49.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.7e-24 115.5 73 78.1
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.3e-23 112.1 69 84.1
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 6.9e-23 111.7 100 68.0
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.2e-22 110.9 69 87.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.8e-21 105.9 59 89.8
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.3e-18 97.4 70 72.9
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-16 90.5 77 63.6
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.8e-15 87.0 61 82.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.4e-15 86.7 69 71.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.2e-13 80.1 130 39.2
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-12 76.6 72 62.5
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-12 76.6 72 62.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.0e-10 71.2 58 63.8
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-08 63.5 51 64.7
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-08 63.5 49 67.3
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 3.7e-08 62.8 51 64.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-07 60.5 110 43.6
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-07 60.5 110 43.6
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 3.1e-07 59.7 63 57.1
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 3.1e-07 59.7 63 57.1


User provided reference genes

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