Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 0.0e+00 1340.9 696 100.0
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 2.3e-272 942.2 673 77.4
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 5.4e-266 921.0 671 75.1
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.6e-260 900.6 671 73.9
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.5e-257 891.7 671 73.0
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 2.2e-227 792.7 595 74.6
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.7e-222 775.4 599 71.3
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.6e-217 760.0 597 70.4
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.8e-216 756.5 599 70.1
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.6e-188 663.7 544 68.8
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 3.7e-129 466.5 780 43.7
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 3.7e-129 466.5 513 56.7
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.3e-113 414.8 697 42.9
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 8.2e-113 412.1 848 36.9
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 4.1e-112 409.8 698 42.6
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 3.5e-111 406.8 869 35.4
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 2.9e-110 403.7 720 40.8
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 5.2e-107 392.9 720 40.0
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 5.3e-104 382.9 792 38.4
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 9.1e-104 382.1 730 39.0
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 5.9e-103 379.4 699 39.8
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.0e-102 378.6 728 39.8
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.5e-101 374.0 839 37.7
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.7e-100 369.8 718 39.4
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.7e-100 369.8 718 39.4
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 1.7e-97 361.3 731 39.8
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.5e-95 353.6 736 38.6
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.7e-94 351.3 799 36.4
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 5.5e-93 346.3 712 37.8
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.6e-92 344.7 804 35.1
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.1e-92 344.4 378 52.6
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 7.5e-90 335.9 714 38.1
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.1e-88 330.5 394 49.7
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.1e-85 322.0 714 38.2
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.5e-85 321.6 705 36.9
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.5e-85 321.6 707 38.5
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 5.7e-82 309.7 704 34.9
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 2.2e-81 307.8 705 35.0
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 2.0e-79 301.2 693 35.8
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 2.7e-79 300.8 701 36.4
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.7e-78 298.1 750 34.5
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 5.0e-78 296.6 707 34.8
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 3.6e-76 290.4 702 35.6
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 6.1e-76 289.7 738 33.7
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 1.1e-72 278.9 778 33.3
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 2.4e-72 277.7 719 34.1
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.5e-71 273.9 749 35.2
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.5e-71 273.9 749 35.2
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.0e-71 273.1 703 34.7
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 5.0e-70 270.0 697 35.4
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.5e-69 268.5 683 34.6
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 3.3e-69 267.3 701 34.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 5.6e-69 266.5 811 31.2
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 5.6e-69 266.5 705 34.2
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 9.5e-69 265.8 750 32.8
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 3.6e-68 263.8 702 33.3
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 8.0e-68 262.7 694 34.7
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 8.0e-68 262.7 506 38.1
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.8e-67 261.5 902 30.2
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 1.8e-67 261.5 702 33.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.6e-66 257.7 758 32.1
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.9e-65 253.4 416 40.6
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 6.4e-65 253.1 403 41.7
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 6.4e-65 253.1 724 33.0
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.4e-64 251.9 776 31.6
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 3.2e-64 250.8 689 33.1
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 4.1e-64 250.4 705 33.6
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 5.4e-64 250.0 710 32.8
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 5.4e-64 250.0 707 32.8
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.6e-63 248.4 713 32.4
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 2.7e-63 247.7 712 33.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.7e-62 245.0 717 31.9
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 8.6e-62 242.7 814 31.6
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 5.6e-61 240.0 724 31.6
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 2.1e-60 238.0 723 32.0
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 2.8e-60 237.7 674 33.7
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.6e-60 237.3 705 33.0
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 6.8e-59 233.0 767 31.6
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.3e-57 228.8 696 32.5
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.6e-55 221.9 770 30.5
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 1.0e-54 219.2 624 31.7
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.9e-54 217.2 401 39.7
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.9e-54 217.2 874 27.9
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 9.6e-53 212.6 747 30.1
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.2e-52 212.2 708 31.6
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 3.6e-52 210.7 441 35.6
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 2.4e-51 208.0 691 29.7
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.4e-51 208.0 654 33.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 5.8e-50 203.4 654 30.6
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 6.4e-49 199.9 665 31.1
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 1.9e-48 198.4 692 29.5
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 3.2e-48 197.6 665 31.1
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 5.4e-48 196.8 890 26.9
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 2.7e-47 194.5 394 36.5
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 6.0e-47 193.4 695 30.8
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.3e-46 192.2 655 29.9
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.9e-45 188.3 697 29.0
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.9e-45 188.3 721 29.0
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 5.6e-45 186.8 721 28.4
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 3.6e-44 184.1 688 29.5
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 6.2e-44 183.3 753 28.4
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 5.3e-43 180.3 726 28.4
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.0e-43 179.5 572 31.8
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.8e-42 176.8 710 29.3
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.4e-40 172.2 693 29.3
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 3.2e-40 171.0 435 34.7
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 7.1e-40 169.9 688 29.2
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 9.3e-40 169.5 735 28.7
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 9.3e-40 169.5 697 28.8
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.2e-39 169.1 722 28.0
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 2.7e-39 167.9 696 29.3
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 3.9e-38 164.1 694 28.8
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 5.1e-38 163.7 701 28.2
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 5.1e-38 163.7 547 29.8
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 5.6e-37 160.2 357 35.3
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 3.6e-36 157.5 738 26.7
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 2.4e-35 154.8 690 27.4
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 9.9e-34 149.4 385 35.1
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 9.3e-32 142.9 778 27.2
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 6.7e-30 136.7 742 26.8
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 5.6e-29 133.7 714 26.6
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.7e-25 122.1 657 27.1
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.3e-22 112.5 144 47.2
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 5.1e-22 110.5 549 25.7
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.5e-21 109.0 114 50.0
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.8e-20 104.8 87 66.7
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.4e-19 102.4 567 25.6
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 1.5e-18 99.0 194 36.1
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 9.3e-16 89.7 110 48.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 2.1e-15 88.6 144 39.6
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 9.7e-13 79.7 41 82.9
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.2e-12 78.6 144 38.2
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 2.8e-12 78.2 797 20.8
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 5.0e-09 67.4 42 78.6
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 8.5e-09 66.6 682 24.8
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.9e-08 65.5 60 58.3
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.1e-07 62.0 748 23.5
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 4.6e-07 60.8 69 49.3
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.9e-06 57.8 49 63.3


User provided reference genes

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