Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 2.4e-204 715.3 373 100.0
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.1e-124 450.7 367 70.3
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 5.5e-124 448.4 417 66.9
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 6.2e-83 312.0 379 54.1
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 2.0e-81 307.0 373 52.3
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.9e-80 302.4 373 51.2
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.3e-56 224.6 392 45.7
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 2.2e-43 180.6 446 36.3
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.6e-38 164.5 455 34.7
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 3.9e-37 159.8 448 34.8
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 3.3e-36 156.8 400 34.0
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 8.2e-35 152.1 426 34.3
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.8e-34 151.0 481 31.4
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 3.1e-34 150.2 462 32.7
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 3.1e-34 150.2 469 34.1
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 5.3e-34 149.4 418 35.4
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-33 147.9 400 37.0
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.0e-33 147.5 493 31.4
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 2.0e-33 147.5 472 34.1
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 4.5e-33 146.4 471 32.1
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 3.8e-32 143.3 407 35.6
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 5.0e-32 142.9 427 35.6
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 6.5e-32 142.5 400 35.0
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-31 141.7 402 34.3
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.1e-31 141.7 450 35.6
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 5.5e-31 139.4 445 35.5
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 7.2e-31 139.0 401 31.7
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-30 138.3 407 34.4
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 2.1e-30 137.5 445 35.1
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 2.7e-30 137.1 394 36.5
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 8.0e-30 135.6 464 31.9
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-29 134.4 422 33.6
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.8e-29 134.4 422 33.6
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.8e-29 134.4 418 34.0
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-29 134.0 421 34.2
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-29 134.0 417 34.3
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 2.3e-29 134.0 452 32.1
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 3.0e-29 133.7 416 33.9
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 8.8e-29 132.1 463 32.2
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 8.8e-29 132.1 438 31.7
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-28 131.0 418 33.0
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 2.6e-28 130.6 429 34.5
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 5.7e-28 129.4 492 31.1
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 5.7e-28 129.4 431 30.9
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.7e-27 127.9 425 31.5
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.7e-27 127.9 444 30.2
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 3.7e-27 126.7 388 31.7
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 6.3e-27 125.9 477 30.2
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 8.2e-27 125.6 390 31.5
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.4e-26 124.0 429 31.5
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 2.4e-26 124.0 403 31.8
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 4.1e-26 123.2 445 31.0
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 4.1e-26 123.2 437 31.1
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 7.0e-26 122.5 471 30.6
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.6e-25 121.3 463 29.6
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 3.5e-25 120.2 426 31.5
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 5.9e-25 119.4 447 29.5
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 7.7e-25 119.0 438 31.1
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.0e-24 118.6 447 31.1
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.7e-24 117.9 365 31.8
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 1.7e-24 117.9 440 32.0
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 2.2e-24 117.5 396 30.8
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.9e-24 117.1 445 31.0
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 6.5e-24 115.9 393 30.3
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 6.5e-24 115.9 393 30.3
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 8.5e-24 115.5 415 31.1
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 1.5e-23 114.8 407 30.7
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.9e-23 114.4 436 28.7
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.9e-23 114.4 505 29.1
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 3.2e-23 113.6 370 30.8
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 4.2e-23 113.2 431 29.5
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 7.2e-23 112.5 396 31.3
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 7.2e-23 112.5 396 31.3
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 7.2e-23 112.5 515 30.1
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 7.2e-23 112.5 369 30.1
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 9.4e-23 112.1 428 29.0
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 9.4e-23 112.1 408 31.9
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.6e-22 111.3 404 31.7
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.6e-22 111.3 457 28.7
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.7e-22 110.5 432 29.4
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.7e-22 110.5 432 29.6
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.7e-22 109.8 432 29.2
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 6.1e-22 109.4 426 30.5
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 6.1e-22 109.4 421 29.5
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.0e-21 108.6 439 30.1
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 2.3e-21 107.5 392 31.4
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.3e-21 107.5 372 30.6
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.0e-21 107.1 460 30.7
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 3.0e-21 107.1 393 30.8
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 5.2e-21 106.3 387 33.6
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 8.8e-21 105.5 468 29.3
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 5.7e-20 102.8 398 30.4
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 7.5e-20 102.4 456 28.9
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 9.7e-20 102.1 386 32.1
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.7e-19 101.3 378 32.5
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-19 100.9 388 31.7
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.2e-19 100.9 435 29.7
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 2.8e-19 100.5 424 29.2
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.8e-19 99.8 377 30.5
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.8e-19 99.8 377 30.5
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 4.8e-19 99.8 377 30.5
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 4.8e-19 99.8 417 27.8
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.1e-18 98.6 403 30.8
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.4e-18 98.2 163 43.6
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 1.4e-18 98.2 469 29.2
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-18 97.4 378 31.0
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 2.4e-18 97.4 418 31.6
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.4e-18 97.4 479 24.4
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 3.1e-18 97.1 450 26.7
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.1e-18 97.1 184 42.4
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.3e-18 96.3 179 41.3
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 5.3e-18 96.3 401 30.2
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 9.1e-18 95.5 268 34.7
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 2.7e-17 94.0 160 41.9
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.5e-17 93.6 432 28.0
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 3.5e-17 93.6 444 27.5
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 2.9e-16 90.5 182 39.6
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.8e-16 90.1 183 39.9
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 6.5e-16 89.4 162 37.7
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 6.5e-16 89.4 501 25.1
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 6.5e-16 89.4 389 28.5
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 8.5e-16 89.0 398 30.4
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-15 88.6 162 37.7
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.5e-15 88.2 426 28.2
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 2.5e-15 87.4 109 48.6
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.5e-15 87.4 58 77.6
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 3.2e-15 87.0 370 30.0
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 4.2e-15 86.7 393 28.2
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 5.5e-15 86.3 412 29.1
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 7.2e-15 85.9 341 30.8
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 9.4e-15 85.5 387 28.7
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 9.4e-15 85.5 412 27.2
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 9.4e-15 85.5 410 27.1
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.2e-14 85.1 361 29.4
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.2e-14 85.1 376 29.3
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.6e-14 84.7 413 28.6
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 4.7e-14 83.2 413 27.8
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 6.1e-14 82.8 385 28.3
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 8.0e-14 82.4 161 39.1
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 8.0e-14 82.4 175 35.4
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.0e-13 82.0 381 29.7
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.4e-13 81.6 222 32.4
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.8e-13 81.3 380 27.9
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.3e-13 80.9 78 59.0
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-13 79.7 164 38.4
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.2e-12 78.6 104 53.8
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 9.8e-12 75.5 424 26.9
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.3e-11 75.1 61 60.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.7e-11 74.7 157 38.9
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 6.3e-11 72.8 388 26.5
HPP92_013922 Vanilla planifolia HOM05D004305 ORTHO05D005159 6.3e-11 72.8 373 26.5
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 4.1e-10 70.1 370 25.9
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 2.0e-09 67.8 152 37.5
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 6.6e-08 62.8 384 26.3
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.5e-07 61.6 370 25.1
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 1.9e-07 61.2 140 37.9
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 5.5e-07 59.7 56 57.1
Os03g0661500 Oryza sativa ssp. japonica HOM05D023203 ORTHO05D025996 8.0e-06 55.8 72 47.2


User provided reference genes

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