Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 6.3e-97 357.5 183 100.0
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.6e-76 289.7 211 74.4
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.6e-76 289.7 211 74.4
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.6e-76 289.7 211 74.4
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 3.0e-75 285.4 211 73.5
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.6e-71 273.1 211 72.0
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 4.6e-71 271.6 211 71.1
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.3e-70 270.0 211 70.1
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.1e-69 266.9 211 69.7
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.1e-69 266.9 211 68.2
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.5e-69 265.8 211 68.7
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.5e-69 265.8 211 68.7
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 5.6e-69 264.6 211 67.8
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 5.6e-69 264.6 211 67.3
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 7.3e-69 264.2 211 67.8
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 9.5e-69 263.8 211 67.3
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.2e-68 263.5 211 67.3
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.6e-68 263.1 211 66.8
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.6e-68 263.1 211 68.2
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.6e-68 263.1 211 69.2
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.6e-68 263.1 211 69.2
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.6e-68 263.1 211 67.8
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 2.1e-68 262.7 211 67.8
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 2.1e-68 262.7 212 66.5
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 2.8e-68 262.3 211 67.3
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.8e-68 262.3 211 67.8
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 3.6e-68 261.9 210 67.6
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 3.6e-68 261.9 211 67.8
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 3.6e-68 261.9 211 66.8
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 3.6e-68 261.9 200 70.0
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 4.7e-68 261.5 211 67.8
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.7e-68 261.5 211 66.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 8.0e-68 260.8 210 69.0
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.4e-67 260.0 211 66.8
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.4e-67 260.0 211 65.9
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.4e-67 260.0 211 66.8
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.4e-67 260.0 211 65.9
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 2.3e-67 259.2 211 67.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.3e-67 259.2 211 67.3
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.3e-67 259.2 211 67.3
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 2.3e-67 259.2 212 66.5
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.0e-67 258.5 211 66.8
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.0e-67 258.5 219 63.9
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 8.9e-67 257.3 194 71.1
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 8.9e-67 257.3 211 66.8
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.2e-66 256.9 211 65.9
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.0e-66 256.1 210 67.1
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 2.0e-66 256.1 211 66.4
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.6e-66 255.8 211 66.8
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 3.4e-66 255.4 211 67.3
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.4e-66 255.4 211 64.5
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 4.4e-66 255.0 211 64.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 4.4e-66 255.0 211 66.4
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 4.4e-66 255.0 211 66.4
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 4.4e-66 255.0 211 65.9
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 5.8e-66 254.6 211 64.9
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 5.8e-66 254.6 211 66.4
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 7.5e-66 254.2 211 66.4
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 7.5e-66 254.2 211 64.5
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 7.5e-66 254.2 211 64.5
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 7.5e-66 254.2 211 64.5
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 7.5e-66 254.2 211 64.5
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 9.8e-66 253.8 211 65.4
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.3e-65 253.4 211 64.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.3e-65 253.4 211 65.4
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 1.3e-65 253.4 211 65.4
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.7e-65 253.1 211 64.0
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.7e-65 253.1 211 64.0
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.7e-65 253.1 211 65.4
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 2.2e-65 252.7 211 65.9
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 2.2e-65 252.7 211 64.9
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.9e-65 251.5 216 63.9
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.4e-65 251.1 211 64.5
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 8.3e-65 250.8 211 65.4
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 8.3e-65 250.8 211 64.0
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 8.3e-65 250.8 211 65.4
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.1e-64 250.4 211 64.0
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 2.4e-64 249.2 211 63.5
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 2.4e-64 249.2 211 63.5
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.2e-64 248.8 211 65.4
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 5.4e-64 248.1 211 65.4
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 9.2e-64 247.3 258 57.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 9.2e-64 247.3 211 64.9
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.6e-63 246.5 211 63.0
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.6e-63 246.5 216 64.4
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 2.0e-63 246.1 235 59.6
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 4.6e-63 245.0 210 63.3
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.3e-61 238.4 211 61.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 5.6e-61 238.0 195 65.1
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 7.3e-61 237.7 231 58.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.2e-60 236.9 258 52.7
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 6.2e-60 234.6 210 61.0
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.2e-58 230.3 210 60.0
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 3.7e-57 225.3 195 63.6
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 3.2e-56 222.2 211 56.9
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.3e-54 216.1 211 57.8
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 6.2e-52 208.0 211 55.9
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 1.8e-51 206.5 322 42.2
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.0e-51 205.3 206 56.8
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 8.9e-51 204.1 196 57.7
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.4e-50 202.2 185 60.0
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 3.4e-50 202.2 211 54.5
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 9.9e-50 200.7 211 52.1
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 2.9e-49 199.1 183 57.9
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 1.4e-48 196.8 187 59.9
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 2.4e-48 196.1 167 67.1
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 2.3e-46 189.5 196 58.2
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.1e-45 187.2 115 79.1
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.1e-45 187.2 212 53.3
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.9e-45 186.4 198 54.5
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 4.7e-44 181.8 212 48.6
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.4e-40 169.5 123 74.8
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 9.3e-40 167.5 248 44.8
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.5e-37 160.2 151 60.3
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 4.0e-35 152.1 118 63.6
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 8.4e-33 144.4 103 71.8
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 4.2e-32 142.1 210 39.0
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.2e-31 140.6 86 80.2
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.8e-30 136.7 151 53.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 6.9e-27 124.8 130 56.2
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 6.9e-27 124.8 75 80.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 6.4e-25 118.2 83 73.5
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.3e-22 110.5 59 89.8
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 2.3e-22 109.8 219 32.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.3e-22 109.8 61 86.9
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.8e-20 102.8 58 86.2
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 8.2e-20 101.3 75 68.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.5e-18 97.1 60 80.0
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.0e-14 84.3 55 76.4
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 5.1e-14 82.0 110 38.2
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.8e-12 76.3 220 31.4
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 9.0e-11 71.2 56 64.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 2.5e-08 63.2 55 63.6
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 9.4e-08 61.2 68 47.1
Sabra11G0123400 Salix brachista HOM05D005684 ORTHO05D349101 5.1e-06 55.5 53 56.6


User provided reference genes

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