Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 9.2e-267 922.9 448 100.0
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.6e-223 779.2 448 85.0
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 6.7e-217 757.3 451 83.8
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 4.7e-202 708.0 442 77.1
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.7e-201 704.1 448 77.0
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.3e-200 701.8 442 76.5
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.7e-186 654.8 444 69.4
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 6.1e-186 654.4 444 70.3
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.4e-185 653.3 443 69.8
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 3.0e-185 652.1 477 66.9
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 4.0e-185 651.7 442 69.5
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 9.8e-184 647.1 444 68.5
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.7e-183 646.4 428 72.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.7e-183 646.4 444 68.2
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 6.3e-183 644.4 444 68.0
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 6.3e-183 644.4 442 68.8
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.8e-182 642.9 444 70.0
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 2.4e-182 642.5 444 68.0
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.0e-181 639.4 444 68.0
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 3.5e-181 638.6 444 67.3
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.0e-180 637.1 444 67.1
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.3e-180 636.0 444 68.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 5.0e-180 634.8 445 67.6
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 5.0e-180 634.8 448 67.4
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.1e-179 633.6 444 67.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.9e-179 632.9 446 68.2
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.9e-179 632.9 444 66.7
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.5e-179 632.5 442 66.7
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.5e-179 632.5 444 67.3
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 3.3e-179 632.1 444 66.0
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 7.2e-179 630.9 444 68.2
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 7.2e-179 630.9 444 66.4
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.2e-178 630.2 444 66.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.2e-178 630.2 444 67.8
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.6e-178 629.8 445 68.3
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 2.8e-178 629.0 445 68.3
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 3.6e-178 628.6 442 66.5
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.3e-177 625.9 442 67.4
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.0e-177 625.2 447 64.7
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 5.2e-177 624.8 456 65.4
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.6e-176 622.5 445 67.4
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 3.4e-176 622.1 444 66.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 8.3e-175 617.5 444 65.1
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 8.3e-175 617.5 489 61.3
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.4e-174 616.7 444 65.3
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.4e-174 615.9 444 64.4
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.4e-174 615.9 444 67.1
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.5e-173 611.7 444 65.3
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 3.8e-172 608.6 444 66.0
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 5.0e-172 608.2 444 64.4
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 8.6e-172 607.4 446 63.5
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.1e-171 607.1 444 64.9
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 2.5e-171 605.9 444 65.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.6e-170 603.2 444 63.1
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 4.7e-170 601.7 446 64.1
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.7e-170 601.7 444 65.5
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.0e-169 600.5 444 63.7
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 3.1e-169 599.0 445 64.7
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 4.0e-169 598.6 445 64.3
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 8.9e-169 597.4 418 66.5
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.2e-168 597.0 443 64.3
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.0e-168 596.3 445 64.0
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 6.4e-167 591.3 444 64.2
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 8.3e-167 590.9 447 63.3
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.2e-165 587.0 450 62.7
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 6.0e-165 584.7 447 62.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 7.8e-165 584.3 451 65.4
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.9e-163 579.7 442 64.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 5.6e-163 578.2 442 64.0
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 7.3e-163 577.8 442 63.6
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.6e-162 576.6 442 63.3
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.3e-161 572.8 446 60.3
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.0e-161 572.0 444 61.9
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 5.2e-161 571.6 447 61.1
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.5e-160 570.1 444 62.8
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.5e-160 570.1 444 62.8
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.5e-160 570.1 420 65.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 3.4e-160 568.9 459 60.6
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 4.4e-160 568.5 445 62.5
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 4.4e-160 568.5 445 62.5
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 4.6e-157 558.5 444 63.1
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.3e-156 556.2 448 60.3
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.9e-155 553.1 383 69.2
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 5.6e-155 551.6 365 73.2
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.2e-154 550.4 365 71.2
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.6e-154 550.1 399 65.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 5.8e-152 541.6 448 58.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.0e-148 529.3 437 61.3
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.9e-147 526.6 442 59.0
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.6e-146 522.3 382 63.6
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 8.1e-146 521.2 381 64.8
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.1e-145 519.2 444 59.5
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 9.9e-144 514.2 439 59.9
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.7e-143 513.5 448 57.1
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.4e-142 510.4 382 65.2
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 2.4e-142 509.6 444 55.2
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-139 500.7 367 66.5
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 8.1e-138 494.6 444 57.4
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.1e-137 494.2 386 62.2
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 3.1e-137 492.7 444 53.6
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 9.0e-137 491.1 446 57.2
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 9.0e-137 491.1 446 57.2
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 9.0e-137 491.1 446 57.2
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 3.4e-136 489.2 448 55.8
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.0e-132 477.6 314 72.0
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.5e-131 473.0 445 55.1
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.1e-130 469.9 446 53.1
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.6e-125 453.8 463 51.0
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 6.0e-125 451.8 447 52.1
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.6e-122 443.7 417 54.9
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 9.0e-121 438.0 458 50.0
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 3.9e-116 422.5 438 51.1
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 3.8e-111 406.0 382 57.9
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.4e-105 386.7 446 48.9
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 9.4e-102 374.8 308 60.4
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.1e-101 373.6 309 59.9
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 6.1e-101 372.1 231 75.8
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 9.7e-99 364.8 370 52.4
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 7.7e-96 355.1 437 43.0
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 6.5e-95 352.1 445 41.6
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.1e-93 347.1 444 41.0
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 5.1e-92 342.4 448 45.8
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 4.4e-91 339.3 441 42.9
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.9e-86 323.9 446 41.9
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 5.5e-86 322.4 426 40.8
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.2e-82 310.5 245 60.0
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.7e-80 302.0 184 76.6
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.0e-71 272.7 232 60.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 2.0e-67 260.8 312 46.5
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.9e-62 244.2 491 33.8
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 2.0e-59 234.2 514 32.1
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.9e-55 220.3 146 73.3
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.1e-52 210.3 146 65.8
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 5.1e-39 166.4 150 52.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.2e-34 151.0 499 29.3
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 6.0e-32 142.9 102 61.8
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 5.6e-30 136.3 93 71.0
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.6e-24 118.2 73 74.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 6.6e-23 112.8 72 68.1
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 5.6e-14 83.2 404 25.0
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 3.4e-11 73.9 71 49.3
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 7.1e-09 66.2 165 33.3
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 5.1e-07 60.1 137 34.3
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 8.7e-07 59.3 74 48.6


User provided reference genes

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