Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.4e-206 722.2 447 100.0
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.9e-159 565.8 461 76.4
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.2e-158 562.4 449 81.5
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.7e-157 559.3 426 82.6
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-152 543.9 426 83.3
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 2.5e-147 526.2 451 70.1
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.4e-143 511.5 451 66.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.9e-142 510.0 451 67.6
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 3.2e-142 509.2 447 70.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.3e-140 503.1 453 63.1
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.5e-139 499.6 451 65.9
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.8e-137 493.4 453 65.1
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 7.6e-136 488.0 450 70.0
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.2e-135 486.5 428 63.3
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 6.4e-135 485.0 449 67.7
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.4e-134 483.8 449 65.5
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 5.4e-134 481.9 453 64.5
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.0e-132 477.6 454 65.2
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-131 474.2 450 65.6
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 7.3e-131 471.5 450 67.1
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 7.6e-128 461.5 447 64.4
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-125 454.1 457 60.0
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-124 450.7 447 64.0
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 5.6e-123 445.3 461 58.1
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 9.6e-123 444.5 450 63.3
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.3e-122 444.1 452 60.6
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 1.6e-122 443.7 457 65.4
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.8e-122 443.0 472 57.4
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.8e-122 442.2 466 60.5
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.2e-120 437.6 451 61.2
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 3.8e-119 432.6 467 60.6
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 6.4e-119 431.8 451 60.8
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 8.4e-119 431.4 454 64.5
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.2e-117 427.6 448 65.2
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.3e-116 424.1 455 60.9
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.1e-115 421.0 463 60.9
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 9.6e-115 417.9 451 60.3
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 3.7e-114 416.0 450 56.4
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 9.0e-113 411.4 459 62.1
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.0e-112 410.2 450 60.2
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-112 409.8 462 54.8
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-112 409.8 462 54.8
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.7e-111 407.1 461 58.1
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.7e-111 407.1 454 60.6
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 2.2e-111 406.8 450 56.0
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.1e-110 404.4 448 62.5
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.5e-109 399.4 451 58.5
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 6.0e-109 398.7 458 57.6
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.0e-108 397.9 451 58.1
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.8e-108 397.1 449 59.7
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 3.0e-108 396.4 445 57.3
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.3e-107 392.5 452 58.8
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 4.3e-107 392.5 446 52.9
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.1e-106 390.2 452 58.6
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 9.0e-105 384.8 415 59.5
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 4.6e-101 372.5 451 54.3
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.0e-100 369.8 446 55.4
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.0e-100 369.8 446 55.4
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-99 367.9 450 53.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.1e-99 367.9 455 59.1
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.3e-99 366.3 465 54.2
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.8e-97 360.5 428 55.1
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.3e-95 354.4 450 55.1
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 4.2e-94 349.4 429 57.1
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 5.5e-94 349.0 445 54.6
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 8.2e-82 308.5 448 49.3
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 9.1e-81 305.1 425 52.9
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 3.8e-79 299.7 455 47.3
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 6.5e-79 298.9 384 53.1
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.0e-75 287.3 442 44.1
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.6e-75 287.0 448 46.9
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 6.3e-74 282.3 463 48.6
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.2e-69 268.1 231 59.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 3.6e-69 266.5 447 39.1
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 8.8e-60 235.3 467 46.5
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.2e-56 224.9 372 48.1
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.7e-56 223.8 453 46.8
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 2.7e-56 223.8 447 42.1
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 4.1e-49 199.9 292 43.5
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-48 198.0 127 69.3
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-48 198.0 127 69.3
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.7e-39 167.9 128 55.5
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 6.6e-39 166.0 275 39.6
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 8.6e-39 165.6 274 38.7
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.1e-38 165.2 271 39.1
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.3e-38 163.3 269 40.1
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.6e-37 160.2 130 55.4
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 8.1e-37 159.1 123 59.3
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 8.1e-37 159.1 129 56.6
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 8.1e-37 159.1 123 59.3
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-36 158.7 123 60.2
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.4e-36 158.3 222 42.3
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.4e-36 158.3 123 58.5
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.8e-36 157.9 123 58.5
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.3e-36 157.5 453 35.5
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 3.1e-36 157.1 287 37.6
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.0e-36 156.8 273 37.7
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 5.2e-36 156.4 276 37.7
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 6.8e-36 156.0 269 37.9
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 6.8e-36 156.0 269 37.2
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 6.8e-36 156.0 269 37.2
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 8.9e-36 155.6 126 57.9
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 8.9e-36 155.6 126 57.9
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 8.9e-36 155.6 123 56.9
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 8.9e-36 155.6 205 44.9
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-35 155.2 278 38.8
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.2e-35 155.2 129 54.3
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 1.5e-35 154.8 130 53.8
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.5e-35 154.8 123 57.7
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.5e-35 154.8 123 57.7
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.5e-35 154.8 191 44.5
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 2.0e-35 154.5 197 43.7
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 2.0e-35 154.5 129 55.8
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 2.6e-35 154.1 123 57.7
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.4e-35 153.7 123 56.1
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 3.4e-35 153.7 123 58.5
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.4e-35 153.7 123 58.5
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 3.4e-35 153.7 123 57.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 3.4e-35 153.7 220 41.4
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.4e-35 153.7 126 54.0
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.4e-35 153.3 287 38.3
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 4.4e-35 153.3 130 53.1
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 4.4e-35 153.3 266 38.7
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 7.5e-35 152.5 123 56.9
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 7.5e-35 152.5 123 56.9
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 9.8e-35 152.1 269 38.7
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 9.8e-35 152.1 123 57.7
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 9.8e-35 152.1 270 37.4
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.3e-34 151.8 270 37.0
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.3e-34 151.8 123 56.9
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-34 151.8 123 56.9
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.3e-34 151.8 125 56.0
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.2e-34 151.0 320 35.9
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.9e-34 150.6 123 56.1
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.7e-34 150.2 166 46.4
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 3.7e-34 150.2 129 55.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 3.7e-34 150.2 270 38.1
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 6.4e-34 149.4 123 55.3
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 8.3e-34 149.1 126 54.0
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 1.1e-33 148.7 229 39.7
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 1.1e-33 148.7 229 39.7
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.4e-33 148.3 190 42.6
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.4e-33 148.3 130 51.5
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.9e-33 147.9 125 53.6
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.9e-33 147.9 125 53.6
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 2.4e-33 147.5 125 54.4
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.4e-33 147.5 258 37.6
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 2.4e-33 147.5 277 37.2
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.2e-33 147.1 275 36.7
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 5.4e-33 146.4 278 36.0
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 7.1e-33 146.0 298 34.9
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.2e-32 145.2 288 39.2
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.7e-31 141.4 121 52.1
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.7e-31 141.4 280 36.1
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.5e-30 137.5 115 54.8
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.1e-28 132.1 377 41.4
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 8.9e-28 129.0 132 53.8
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 4.9e-26 123.2 69 84.1
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 2.2e-10 71.2 163 46.6
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 3.5e-08 63.9 56 55.4
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.9e-06 58.2 53 52.8
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.5e-06 57.8 53 50.9


User provided reference genes

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