Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 5.9e-100 367.5 178 100.0
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 6.1e-97 357.5 178 97.8
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.7e-94 348.2 178 92.7
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 5.0e-91 337.8 178 91.6
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 6.6e-91 337.4 178 89.9
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 6.6e-91 337.4 178 89.9
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.5e-90 336.3 178 89.3
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 3.3e-90 335.1 178 89.3
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 4.6e-84 314.7 176 83.5
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 7.8e-84 313.9 178 82.0
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.0e-83 313.5 178 80.3
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.5e-82 308.9 178 80.3
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 4.3e-82 308.1 178 79.8
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 7.3e-82 307.4 173 80.9
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 2.1e-81 305.8 178 81.5
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 3.6e-81 305.1 178 77.5
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 4.7e-81 304.7 178 79.8
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 6.2e-81 304.3 173 80.3
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.1e-80 303.5 173 80.3
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.8e-80 302.8 179 81.0
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 2.3e-80 302.4 177 80.2
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 3.1e-80 302.0 171 80.7
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 6.8e-80 300.8 173 79.8
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 6.8e-80 300.8 175 77.1
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.5e-79 299.7 178 77.0
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.5e-79 299.7 173 79.2
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.6e-79 298.9 173 79.2
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.4e-79 298.5 171 81.3
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.8e-79 297.7 173 78.0
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 5.8e-79 297.7 174 78.7
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 7.5e-79 297.4 171 79.5
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 7.5e-79 297.4 180 76.7
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 7.5e-79 297.4 171 78.9
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.3e-78 296.6 172 77.3
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.3e-78 296.6 172 79.1
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 79.4
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.7e-78 296.2 174 76.4
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.7e-78 296.2 173 76.9
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.2e-78 295.8 173 78.0
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 3.7e-78 295.0 178 75.3
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 3.7e-78 295.0 174 76.4
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 3.7e-78 295.0 173 77.5
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 3.7e-78 295.0 175 76.6
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 4.9e-78 294.7 170 77.6
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 4.9e-78 294.7 170 77.6
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 6.4e-78 294.3 175 76.6
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 8.3e-78 293.9 173 75.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 8.3e-78 293.9 178 74.7
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 1.4e-77 293.1 173 77.5
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.9e-77 292.7 178 74.7
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 2.4e-77 292.4 170 77.6
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.4e-77 292.4 170 77.6
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.4e-77 292.4 175 75.4
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 4.1e-77 291.6 176 74.4
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.1e-77 291.6 171 77.8
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 5.4e-77 291.2 167 77.8
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 5.4e-77 291.2 172 75.6
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 7.1e-77 290.8 180 75.6
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 7.1e-77 290.8 180 75.0
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 7.1e-77 290.8 167 77.8
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 2.1e-76 289.3 171 77.2
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 2.7e-76 288.9 171 76.0
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 2.7e-76 288.9 171 76.0
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.7e-76 288.9 173 75.7
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 3.5e-76 288.5 174 73.6
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.6e-76 288.1 171 77.2
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 4.6e-76 288.1 167 76.0
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 7.8e-76 287.3 170 76.5
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.0e-75 287.0 173 75.1
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.7e-75 286.2 170 75.3
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 3.9e-75 285.0 171 73.7
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.9e-75 285.0 208 65.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.1e-75 284.6 159 79.9
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 6.6e-75 284.3 171 76.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 8.6e-75 283.9 169 73.4
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 8.6e-75 283.9 166 75.3
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.5e-74 283.1 167 76.6
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.9e-74 282.7 169 74.0
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.9e-74 282.7 166 77.1
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.9e-74 282.7 166 77.1
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.9e-74 282.7 171 73.7
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 3.3e-74 282.0 168 74.4
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 4.3e-74 281.6 166 75.9
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 9.5e-74 280.4 182 72.0
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.2e-73 280.0 169 74.6
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 2.1e-73 279.3 174 73.0
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.1e-73 279.3 162 79.0
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.6e-73 278.5 169 72.8
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 6.2e-73 277.7 172 70.9
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 6.2e-73 277.7 166 74.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.1e-72 276.9 178 71.9
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.4e-72 276.6 164 77.4
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.3e-72 275.8 171 71.3
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.0e-72 275.0 175 74.3
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 5.2e-72 274.6 169 71.6
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 5.2e-72 274.6 171 71.3
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 6.8e-72 274.2 236 58.5
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 8.9e-72 273.9 172 71.5
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 1.2e-71 273.5 175 72.0
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 2.0e-71 272.7 174 70.7
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 2.0e-71 272.7 174 70.7
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 2.6e-71 272.3 163 76.7
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 3.4e-71 271.9 174 71.3
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.4e-71 271.6 175 70.9
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-70 270.0 174 70.7
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.2e-70 269.2 169 70.4
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 3.8e-70 268.5 174 69.0
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.9e-69 266.2 172 67.4
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 7.1e-69 264.2 174 69.5
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.2e-68 263.5 175 66.3
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 2.1e-68 262.7 174 69.0
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 2.1e-68 262.7 175 67.4
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 2.7e-68 262.3 175 66.3
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 2.7e-68 262.3 174 68.4
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 6.0e-68 261.2 175 67.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 7.8e-68 260.8 164 73.8
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 7.8e-68 260.8 164 73.8
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.3e-67 260.0 154 76.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.3e-67 259.2 164 72.6
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 5.1e-67 258.1 164 72.6
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 5.6e-66 254.6 169 66.3
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 1.2e-65 253.4 157 75.2
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 5.2e-64 248.1 175 68.0
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.5e-63 246.5 166 66.3
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.4e-63 245.4 157 74.5
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.7e-62 243.0 170 61.8
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.9e-62 242.3 181 63.0
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.4e-61 240.0 168 69.6
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 2.4e-61 239.2 175 62.3
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 4.2e-61 238.4 169 65.7
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.7e-59 233.0 166 63.3
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 8.7e-59 230.7 173 61.8
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 4.3e-58 228.4 168 60.7
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 5.6e-58 228.0 165 62.4
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.9e-50 203.0 169 53.3
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 8.1e-49 197.6 109 80.7
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 4.0e-48 195.3 122 73.0
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.2e-46 189.5 114 73.7
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.2e-45 185.3 111 77.5
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 6.7e-43 177.9 170 48.8
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 6.7e-43 177.9 111 72.1
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 3.3e-42 175.6 104 76.0
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 4.3e-42 175.3 167 52.7
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 7.4e-42 174.5 104 75.0
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-40 170.6 103 74.8
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 1.8e-40 169.9 178 54.5
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 4.5e-39 165.2 105 71.4
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.0e-38 164.1 115 65.2
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.9e-37 159.8 109 65.1
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.9e-37 159.8 109 65.1
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.5e-34 150.2 85 81.2
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 4.3e-34 148.7 172 47.7
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 6.5e-30 134.8 162 40.7
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 7.2e-29 131.3 144 53.5
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-27 127.5 79 72.2
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 6.9e-24 114.8 123 48.8
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.2e-20 104.0 187 29.9
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.4e-18 95.5 63 65.1
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.7e-17 93.6 68 63.2
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 6.9e-16 88.2 79 54.4
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.4e-15 85.9 66 57.6
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.2e-14 83.2 66 56.1
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.2e-12 77.4 68 57.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.5e-10 70.5 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.5e-07 58.9 48 60.4


User provided reference genes

Program Settings