Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib211G0437 Durio zibethinus HOM05D002284 ORTHO05D002427 5.1e-51 204.1 104 100.0
Thecc.04G104600 Theobroma cacao HOM05D002284 ORTHO05D002427 9.0e-32 140.2 96 77.1
Duzib133G1563 Durio zibethinus HOM05D002284 ORTHO05D002427 2.0e-31 139.0 95 74.7
COL.COLO4_08397 Corchorus olitorius HOM05D002284 ORTHO05D002427 2.4e-24 115.5 91 65.9
Gohir.A07G180500 Gossypium hirsutum HOM05D002284 ORTHO05D002427 4.1e-24 114.8 96 65.6
Gohir.D07G187250 Gossypium hirsutum HOM05D002284 ORTHO05D002427 3.2e-21 105.1 97 62.9
Gorai.001G208100 Gossypium raimondii HOM05D002284 ORTHO05D002427 4.2e-21 104.8 70 70.0
Gohir.D07G130200 Gossypium hirsutum HOM05D002284 ORTHO05D002427 5.9e-15 84.3 87 58.6
Gorai.001G140800 Gossypium raimondii HOM05D002284 ORTHO05D002427 5.9e-15 84.3 87 58.6
Prupe.8G264800 Prunus persica HOM05D002284 ORTHO05D002427 2.2e-14 82.4 108 49.1
Dinv33075 Davidia involucrata HOM05D002284 ORTHO05D002427 2.9e-14 82.0 96 49.0
Lj6A725T106 Lonicera japonica HOM05D002284 ORTHO05D002427 6.5e-14 80.9 87 51.7
Gohir.A07G126000 Gossypium hirsutum HOM05D002284 ORTHO05D002427 2.5e-13 79.0 87 56.3
Potri.002G201800 Populus trichocarpa HOM05D002284 ORTHO05D002427 4.2e-13 78.2 123 40.7
Hma1.2p1_0212F.1_g090275 Hydrangea macrophylla HOM05D002284 ORTHO05D002427 5.5e-13 77.8 85 49.4
Hma1.2p1_0212F.1_g090280 Hydrangea macrophylla HOM05D002284 ORTHO05D002427 5.5e-13 77.8 85 49.4
TAR636G1141 Trochodendron aralioides HOM05D002284 ORTHO05D002427 5.5e-13 77.8 70 54.3
GSVIVG01028049001 Vitis vinifera HOM05D002284 ORTHO05D002427 1.2e-12 76.6 87 52.9
Peaxi162Scf00001g00353 Petunia axillaris HOM05D002284 ORTHO05D002427 2.7e-12 75.5 75 52.0
Duzib211G0607 Durio zibethinus HOM05D002284 ORTHO05D002427 4.6e-12 74.7 104 46.2
TAR636G0399 Trochodendron aralioides HOM05D002284 ORTHO05D002427 4.6e-12 74.7 98 49.0
Manes.01G222300 Manihot esculenta HOM05D002284 ORTHO05D002427 2.3e-11 72.4 75 49.3
Potri.002G201900 Populus trichocarpa HOM05D002284 ORTHO05D002427 2.3e-11 72.4 84 52.4
Lj5g0016972 Lotus japonicus HOM05D002284 ORTHO05D002427 3.9e-11 71.6 86 45.3
Cfa005871 Carpinus fangiana HOM05D002284 ORTHO05D002427 5.1e-11 71.2 106 39.6
CiPaw.07G112100 Carya illinoinensis HOM05D002284 ORTHO05D002427 6.7e-11 70.9 106 41.5
Ciclev10023328m.g Citrus clementina HOM05D002284 ORTHO05D002427 6.7e-11 70.9 62 56.5
THA.LOC104801286 Tarenaya hassleriana HOM05D002284 ORTHO05D002427 6.7e-11 70.9 85 48.2
COL.COLO4_23307 Corchorus olitorius HOM05D002284 ORTHO05D002427 8.8e-11 70.5 66 56.1
Haze_04977 Corylus avellana HOM05D002284 ORTHO05D002427 1.1e-10 70.1 120 38.3
Lsat_1_v5_gn_5_84821 Lactuca sativa HOM05D002284 ORTHO05D002427 2.0e-10 69.3 83 55.4
Manes.01G222400 Manihot esculenta HOM05D002284 ORTHO05D002427 3.3e-10 68.6 61 55.7
Atru.chr5.1090 Acer truncatum HOM05D002284 ORTHO05D002427 7.4e-10 67.4 126 41.3
Lsat_1_v5_gn_5_84801 Lactuca sativa HOM05D002284 ORTHO05D002427 7.4e-10 67.4 73 54.8
Nitab4.5_0001859g0060 Nicotiana tabacum HOM05D002284 ORTHO05D002427 9.7e-10 67.0 76 50.0
Cfa005873 Carpinus fangiana HOM05D002284 ORTHO05D002427 1.3e-09 66.6 126 37.3
MD11G1306600 Malus domestica HOM05D002284 ORTHO05D002427 1.7e-09 66.2 110 40.0
AL6G50860 Arabidopsis lyrata HOM05D002284 ORTHO05D002427 2.2e-09 65.9 95 43.2
CiPaw.07G112000 Carya illinoinensis HOM05D002284 ORTHO05D002427 2.8e-09 65.5 102 42.2
DCAR_002859 Daucus carota HOM05D002284 ORTHO05D002427 2.8e-09 65.5 80 43.8
ECA234G1340 Erigeron canadensis HOM05D002284 ORTHO05D002427 2.8e-09 65.5 79 46.8
FAN24G1647 Fragaria x ananassa HOM05D002284 ORTHO05D002427 2.8e-09 65.5 103 37.9
Thecc.01G305700 Theobroma cacao HOM05D002284 ORTHO05D002427 2.8e-09 65.5 47 61.7
AT4G02270 Arabidopsis thaliana HOM05D002284 ORTHO05D002427 3.7e-09 65.1 95 43.2
Ciclev10031144m.g Citrus clementina HOM05D002284 ORTHO05D002427 3.7e-09 65.1 42 69.0
Gohir.D12G132200 Gossypium hirsutum HOM05D002284 ORTHO05D002427 3.7e-09 65.1 40 72.5
Gorai.008G143300 Gossypium raimondii HOM05D002284 ORTHO05D002427 3.7e-09 65.1 40 72.5
Gohir.A12G128600 Gossypium hirsutum HOM05D002284 ORTHO05D002427 4.8e-09 64.7 40 72.5
Haze_04978 Corylus avellana HOM05D002284 ORTHO05D002427 6.3e-09 64.3 118 36.4
Carub.0006s3490 Capsella rubella HOM05D002284 ORTHO05D002427 8.2e-09 63.9 95 42.1
Nitab4.5_0000116g0320 Nicotiana tabacum HOM05D002284 ORTHO05D002427 8.2e-09 63.9 100 42.0
BcaC01g06766 Brassica carinata HOM05D002284 ORTHO05D002427 1.1e-08 63.5 85 43.5
A03p31130 Brassica napus HOM05D002284 ORTHO05D002427 1.1e-08 63.5 85 43.5
C03p37940 Brassica napus HOM05D002284 ORTHO05D002427 1.1e-08 63.5 85 43.5
BolC3t16081H Brassica oleracea HOM05D002284 ORTHO05D002427 1.1e-08 63.5 85 43.5
BraA03t12290Z Brassica rapa HOM05D002284 ORTHO05D002427 1.1e-08 63.5 85 43.5
BcaB05g23612 Brassica carinata HOM05D002284 ORTHO05D002427 1.4e-08 63.2 95 40.0
Cpa.g.sc151.28 Carica papaya HOM05D002284 ORTHO05D002427 1.4e-08 63.2 63 49.2
Ciclev10023460m.g Citrus clementina HOM05D002284 ORTHO05D002427 1.4e-08 63.2 96 42.7
FAN15G1623 Fragaria x ananassa HOM05D002284 ORTHO05D002427 1.4e-08 63.2 122 35.2
QL12p027824 Quercus lobata HOM05D002284 ORTHO05D002427 1.4e-08 63.2 49 59.2
TWI14G0960 Tripterygium wilfordii HOM05D002284 ORTHO05D002427 1.4e-08 63.2 59 52.5
A02p24600 Brassica napus HOM05D002284 ORTHO05D002427 1.8e-08 62.8 95 40.0
BraA02t07451Z Brassica rapa HOM05D002284 ORTHO05D002427 1.8e-08 62.8 95 40.0
Cfa005872 Carpinus fangiana HOM05D002284 ORTHO05D002427 1.8e-08 62.8 126 37.3
Lj2P1199T22 Lonicera japonica HOM05D002284 ORTHO05D002427 1.8e-08 62.8 71 50.7
MBI18_g21795_MAGBIO Magnolia biondii HOM05D002284 ORTHO05D002427 1.8e-08 62.8 62 51.6
Sabra14G0094000 Salix brachista HOM05D002284 ORTHO05D002427 1.8e-08 62.8 61 49.2
Potri.017G145800 Populus trichocarpa HOM05D002284 ORTHO05D002427 2.4e-08 62.4 67 50.7
Solyc09g075410.4 Solanum lycopersicum HOM05D002284 ORTHO05D002427 2.4e-08 62.4 100 40.0
Sopen09g030190 Solanum pennellii HOM05D002284 ORTHO05D002427 2.4e-08 62.4 100 40.0
Thecc.01G305600 Theobroma cacao HOM05D002284 ORTHO05D002427 2.4e-08 62.4 47 59.6
Duzib213G0647 Durio zibethinus HOM05D002284 ORTHO05D002427 3.1e-08 62.0 44 65.9
Thhalv10029026m.g Eutrema salsugineum HOM05D002284 ORTHO05D002427 3.1e-08 62.0 95 40.0
MD03G1291700 Malus domestica HOM05D002284 ORTHO05D002427 3.1e-08 62.0 117 41.0
TWI14G1179 Tripterygium wilfordii HOM05D002284 ORTHO05D002427 3.1e-08 62.0 59 52.5
Atru.chr12.377 Acer truncatum HOM05D002284 ORTHO05D002427 4.1e-08 61.6 37 67.6
BcaC03g16113 Brassica carinata HOM05D002284 ORTHO05D002427 4.1e-08 61.6 95 38.9
C02p38840 Brassica napus HOM05D002284 ORTHO05D002427 4.1e-08 61.6 95 38.9
BolC2t09899H Brassica oleracea HOM05D002284 ORTHO05D002427 4.1e-08 61.6 95 38.9
ECA248G1518 Erigeron canadensis HOM05D002284 ORTHO05D002427 4.1e-08 61.6 60 51.7
Ca_10319_v3 Cicer arietinum L. HOM05D002284 ORTHO05D002427 5.3e-08 61.2 61 50.8
QL12p027843 Quercus lobata HOM05D002284 ORTHO05D002427 5.3e-08 61.2 49 57.1
TWI14G0334 Tripterygium wilfordii HOM05D002284 ORTHO05D002427 5.3e-08 61.2 51 54.9
FvH4_2g26070 Fragaria vesca HOM05D002284 ORTHO05D002427 6.9e-08 60.8 114 37.7
FAN24G0447 Fragaria x ananassa HOM05D002284 ORTHO05D002427 6.9e-08 60.8 114 37.7
HanXRQChr01g0000961 Helianthus annuus HOM05D002284 ORTHO05D002427 6.9e-08 60.8 44 63.6
HanXRQChr01g0000971 Helianthus annuus HOM05D002284 ORTHO05D002427 6.9e-08 60.8 44 63.6
Lsat_1_v5_gn_5_84781 Lactuca sativa HOM05D002284 ORTHO05D002427 6.9e-08 60.8 82 48.8
PGSC0003DMG400031794 Solanum tuberosum HOM05D002284 ORTHO05D002427 6.9e-08 60.8 101 40.6
Sabra02G0157200 Salix brachista HOM05D002284 ORTHO05D002427 9.1e-08 60.5 70 51.4
Atru.chr12.376 Acer truncatum HOM05D002284 ORTHO05D002427 1.2e-07 60.1 43 62.8
Aqoxy2G03141 Aquilegia oxysepala HOM05D002284 ORTHO05D002427 1.2e-07 60.1 73 41.1
Lalb_Chr02g0146521 Lupinus albus HOM05D002284 ORTHO05D002427 1.2e-07 60.1 80 43.8
Sabra14G0094100 Salix brachista HOM05D002284 ORTHO05D002427 1.2e-07 60.1 53 52.8
Sabra14G0094200 Salix brachista HOM05D002284 ORTHO05D002427 1.2e-07 60.1 60 48.3
TWI14G0465 Tripterygium wilfordii HOM05D002284 ORTHO05D002427 1.2e-07 60.1 94 43.6
Actinidia21027 Actinidia chinensis HOM05D002284 ORTHO05D002427 1.5e-07 59.7 50 54.0
FAN20G2604 Fragaria x ananassa HOM05D002284 ORTHO05D002427 1.5e-07 59.7 122 33.6
Sed0020408 Sechium edule HOM05D002284 ORTHO05D002427 1.5e-07 59.7 87 37.9
BcaB01g02440 Brassica carinata HOM05D002284 ORTHO05D002427 2.0e-07 59.3 85 40.0
CAN.G862.64 Capsicum annuum HOM05D002284 ORTHO05D002427 2.0e-07 59.3 106 38.7
Lsat_1_v5_gn_5_190420 Lactuca sativa HOM05D002284 ORTHO05D002427 2.0e-07 59.3 50 60.0
Cpa.g.c34016 Carica papaya HOM05D002284 ORTHO05D002427 2.6e-07 58.9 63 47.6
Actinidia21026 Actinidia chinensis HOM05D002284 ORTHO05D002427 3.4e-07 58.5 50 50.0
Actinidia25819 Actinidia chinensis HOM05D002284 ORTHO05D002427 3.4e-07 58.5 50 52.0
Lsat_1_v5_gn_5_84741 Lactuca sativa HOM05D002284 ORTHO05D002427 3.4e-07 58.5 82 48.8
GSVIVG01028048001 Vitis vinifera HOM05D002284 ORTHO05D002427 3.4e-07 58.5 39 66.7
Atru.chr5.1091 Acer truncatum HOM05D002284 ORTHO05D002427 4.5e-07 58.2 106 38.7
Prupe.8G264700 Prunus persica HOM05D002284 ORTHO05D002427 4.5e-07 58.2 46 58.7
QL12p027850 Quercus lobata HOM05D002284 ORTHO05D002427 4.5e-07 58.2 89 44.9
Glyma.02G016200 Glycine max HOM05D002284 ORTHO05D002427 5.9e-07 57.8 122 34.4
Duzib133G1192 Durio zibethinus HOM05D002284 ORTHO05D002427 1.0e-06 57.0 43 65.1
FvH4_2g26050 Fragaria vesca HOM05D002284 ORTHO05D002427 1.0e-06 57.0 98 43.9
FAN15G3395 Fragaria x ananassa HOM05D002828 ORTHO05D003457 1.0e-06 57.0 98 43.9
FAN24G1926 Fragaria x ananassa HOM05D002284 ORTHO05D002427 1.0e-06 57.0 98 43.9
Gorai.007G126500 Gossypium raimondii HOM05D002284 ORTHO05D002427 1.0e-06 57.0 121 37.2
DCAR_002858 Daucus carota HOM05D002284 ORTHO05D002427 1.3e-06 56.6 89 38.2
Medtr1g088110 Medicago truncatula HOM05D002284 ORTHO05D002427 1.3e-06 56.6 50 54.0
Potri.014G126500 Populus trichocarpa HOM05D002284 ORTHO05D002427 1.3e-06 56.6 67 46.3
TPR.G33986 Trifolium pratense HOM05D002284 ORTHO05D002427 1.3e-06 56.6 50 52.0
GSVIVG01028047001 Vitis vinifera HOM05D002284 ORTHO05D002427 1.3e-06 56.6 90 37.8
ClCG09G005700 Citrullus lanatus HOM05D002284 ORTHO05D002427 1.7e-06 56.2 90 38.9
Glyma.10G016600 Glycine max HOM05D002284 ORTHO05D002427 1.7e-06 56.2 111 36.0
COL.COLO4_23309 Corchorus olitorius HOM05D002284 ORTHO05D002427 2.2e-06 55.8 39 64.1
FvH4_2g04660 Fragaria vesca HOM05D002284 ORTHO05D002427 2.2e-06 55.8 127 30.7
Phvul.007G218200 Phaseolus vulgaris HOM05D002284 ORTHO05D002427 2.2e-06 55.8 75 40.0
Sp6g02160 Schrenkiella parvula HOM05D002284 ORTHO05D002427 2.2e-06 55.8 95 36.8
Thecc.01G305300 Theobroma cacao HOM05D002284 ORTHO05D002427 2.2e-06 55.8 46 56.5
TPR.G34018 Trifolium pratense HOM05D002284 ORTHO05D002427 2.2e-06 55.8 86 38.4
Aa31LG5G1930 Aethionema arabicum HOM05D002284 ORTHO05D002427 2.9e-06 55.5 95 40.0
CARHR250480 Cardamine hirsuta HOM05D002284 ORTHO05D002427 2.9e-06 55.5 95 37.9
COL.COLO4_23310 Corchorus olitorius HOM05D002284 ORTHO05D002427 2.9e-06 55.5 90 42.2
Gohir.D07G130300 Gossypium hirsutum HOM05D002284 ORTHO05D002427 2.9e-06 55.5 58 51.7
Potri.014G126200 Populus trichocarpa HOM05D002284 ORTHO05D002427 2.9e-06 55.5 46 52.2
Potri.014G126250 Populus trichocarpa HOM05D002284 ORTHO05D002427 2.9e-06 55.5 46 52.2
Thecc.01G305000 Theobroma cacao HOM05D002284 ORTHO05D002427 2.9e-06 55.5 88 36.4
Thecc.01G305100 Theobroma cacao HOM05D002284 ORTHO05D002427 2.9e-06 55.5 43 58.1
Aqoxy2G02879 Aquilegia oxysepala HOM05D002284 ORTHO05D002427 3.8e-06 55.1 54 44.4
FAN27G1649 Fragaria x ananassa HOM05D002828 ORTHO05D003457 3.8e-06 55.1 98 42.9
MD03G1291600 Malus domestica HOM05D002284 ORTHO05D002427 3.8e-06 55.1 45 53.3
PGR003G0002 Punica granatum HOM05D002284 ORTHO05D002427 3.8e-06 55.1 97 40.2
PGR044G0723 Punica granatum HOM05D002284 ORTHO05D002427 3.8e-06 55.1 97 40.2
RcHm_v2.0_Chr6g0294411 Rosa chinensis HOM05D002284 ORTHO05D002427 3.8e-06 55.1 98 42.9
RcHm_v2.0_Chr6g0294431 Rosa chinensis HOM05D002284 ORTHO05D002427 3.8e-06 55.1 62 48.4
Sed0010293 Sechium edule HOM05D002284 ORTHO05D002427 3.8e-06 55.1 91 39.6
Gohir.A04G048132 Gossypium hirsutum HOM05D002284 ORTHO05D002427 5.0e-06 54.7 44 56.8
HanXRQChr04g0105451 Helianthus annuus HOM05D002284 ORTHO05D002427 5.0e-06 54.7 45 55.6
FAN27G1469 Fragaria x ananassa HOM05D002284 ORTHO05D002427 6.5e-06 54.3 123 32.5
Lj5g0027666 Lotus japonicus HOM05D002284 ORTHO05D002427 6.5e-06 54.3 40 60.0
VMungo0720G1206 Vigna mungo HOM05D002284 ORTHO05D002427 6.5e-06 54.3 86 40.7
CSS0023130 Camellia sinensis var. sinensis HOM05D002284 ORTHO05D002427 8.5e-06 53.9 86 41.9
Thhalv10001657m.g Eutrema salsugineum HOM05D002284 ORTHO05D002427 8.5e-06 53.9 36 63.9
Phvul.007G218100 Phaseolus vulgaris HOM05D002284 ORTHO05D002427 8.5e-06 53.9 65 46.2
Potri.014G126300 Populus trichocarpa HOM05D002284 ORTHO05D002427 8.5e-06 53.9 37 56.8


User provided reference genes

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