Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.0e-196 689.9 347 100.0
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 2.4e-153 545.8 347 80.7
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.4e-144 515.4 349 78.5
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 1.0e-143 513.8 341 76.8
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.0e-143 513.8 347 78.4
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.4e-142 510.0 347 78.1
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.1e-137 491.9 347 73.5
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 9.1e-121 437.6 269 81.4
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.2e-102 375.6 270 71.9
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 1.7e-95 353.6 345 59.1
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.3e-94 349.0 344 59.0
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.0e-91 340.1 347 57.1
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 2.6e-91 339.7 344 56.4
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.0e-88 330.1 352 56.2
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 6.0e-88 328.6 345 56.5
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.3e-87 327.4 347 55.6
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.3e-87 326.6 350 54.0
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 4.0e-84 315.8 338 53.6
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.3e-79 300.8 351 52.7
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.1e-78 297.7 355 50.7
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 3.6e-77 292.7 359 51.0
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 4.1e-73 279.3 330 49.4
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 5.4e-73 278.9 304 53.6
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 5.4e-73 278.9 344 48.8
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 2.3e-71 273.5 250 57.2
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 3.3e-70 269.6 338 49.7
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 2.1e-69 266.9 421 43.5
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 6.4e-66 255.4 276 53.6
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.1e-65 254.6 332 47.9
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 4.2e-65 252.7 333 48.0
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 1.6e-64 250.8 300 50.3
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.9e-63 246.1 345 45.5
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 5.1e-63 245.7 329 46.5
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 5.1e-63 245.7 270 52.6
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 5.1e-63 245.7 345 45.5
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 6.6e-63 245.4 345 45.5
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 2.5e-62 243.4 232 58.6
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 3.3e-62 243.0 329 45.9
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 8.1e-61 238.4 345 46.7
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.0e-60 236.1 348 48.0
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 1.2e-59 234.6 351 47.0
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.3e-58 231.1 354 46.0
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 8.4e-58 228.4 293 49.5
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.9e-57 227.3 332 44.9
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.4e-57 226.9 293 49.5
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 4.2e-57 226.1 300 47.3
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 7.1e-57 225.3 311 47.3
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 4.6e-56 222.6 317 48.3
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 7.9e-56 221.9 320 45.3
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.0e-55 221.5 329 46.8
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.0e-55 221.5 302 46.0
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 3.9e-55 219.5 293 48.1
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 6.6e-55 218.8 313 44.4
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 8.1e-53 211.8 326 43.3
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 3.1e-52 209.9 313 46.6
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 3.1e-52 209.9 331 42.6
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.5e-51 206.1 337 40.7
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 8.4e-50 201.8 340 43.5
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 8.4e-50 201.8 316 46.8
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 8.4e-50 201.8 273 47.6
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.9e-49 200.7 338 40.2
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 4.2e-49 199.5 346 41.6
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 5.4e-49 199.1 168 64.9
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 2.7e-48 196.8 316 46.2
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 3.0e-47 193.4 342 41.2
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 3.9e-47 193.0 347 40.9
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 1.1e-46 191.4 340 39.1
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.5e-46 191.0 290 41.7
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 2.5e-46 190.3 346 39.3
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 3.3e-46 189.9 348 40.2
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 3.7e-45 186.4 316 41.8
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 3.7e-45 186.4 356 39.0
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 4.8e-45 186.0 339 37.8
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 6.2e-45 185.7 351 40.7
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.4e-44 184.5 250 46.0
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 1.8e-44 184.1 337 40.7
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 5.3e-44 182.6 343 40.2
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 6.9e-44 182.2 343 40.5
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 2.0e-43 180.6 280 42.9
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 2.6e-43 180.3 357 39.2
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 3.4e-43 179.9 346 41.0
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 4.5e-43 179.5 348 40.2
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 5.8e-43 179.1 347 40.6
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.7e-42 177.6 308 39.9
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 1.7e-42 177.6 359 39.0
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.7e-42 177.6 227 48.5
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 2.2e-42 177.2 301 44.2
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.9e-42 176.8 296 39.5
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 3.8e-42 176.4 290 41.7
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 8.4e-42 175.3 283 40.6
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 2.5e-41 173.7 341 39.0
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 2.5e-41 173.7 274 42.7
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.2e-41 173.3 294 41.2
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 5.5e-41 172.6 344 39.0
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 5.5e-41 172.6 291 40.2
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 5.5e-41 172.6 280 41.8
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 7.1e-41 172.2 274 45.3
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 9.3e-41 171.8 282 41.5
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 1.2e-40 171.4 282 41.5
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.1e-40 170.6 344 38.1
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 4.6e-40 169.5 294 41.5
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 6.0e-40 169.1 341 40.5
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 1.0e-39 168.3 293 42.3
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.0e-39 166.8 297 40.1
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 6.7e-39 165.6 322 39.1
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 8.7e-39 165.2 296 39.2
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 1.9e-38 164.1 293 40.3
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.3e-38 162.9 339 38.3
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 5.7e-38 162.5 348 36.5
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.4e-38 162.2 338 39.1
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.3e-37 161.4 293 39.6
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.3e-37 161.4 339 38.3
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.6e-37 161.0 293 39.6
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.6e-37 161.0 299 38.5
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.6e-37 161.0 223 42.2
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.8e-37 160.2 302 37.7
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 6.2e-37 159.1 299 40.1
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 6.2e-37 159.1 288 41.3
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 8.2e-37 158.7 300 40.0
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 8.2e-37 158.7 338 38.8
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.1e-36 158.3 304 39.5
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.1e-36 158.3 261 43.3
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.8e-36 157.5 294 37.4
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 2.4e-36 157.1 297 39.1
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 2.4e-36 157.1 299 39.5
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 4.1e-36 156.4 222 42.3
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 5.3e-36 156.0 198 49.0
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 2.6e-35 153.7 301 38.9
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.6e-35 153.7 288 37.8
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 4.5e-35 152.9 295 40.0
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 4.5e-35 152.9 295 38.3
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 4.5e-35 152.9 305 38.4
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.1e-33 148.3 333 36.0
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 2.5e-33 147.1 256 38.7
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 2.5e-33 147.1 105 72.4
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.1e-32 144.1 294 36.1
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 4.6e-32 142.9 300 36.3
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 6.1e-32 142.5 296 36.8
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 1.8e-31 141.0 322 34.2
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 2.3e-31 140.6 339 34.5
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.5e-30 137.9 197 43.7
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.4e-28 131.3 229 38.9
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 4.1e-28 129.8 294 36.4
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 1.2e-27 128.3 140 54.3
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 7.7e-27 125.6 234 40.2
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.0e-26 125.2 313 33.2
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 6.3e-21 105.9 181 39.2
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.3e-20 102.8 139 48.2
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.2e-19 101.7 260 33.1
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 1.2e-19 101.7 72 73.6
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 3.4e-19 100.1 209 34.9
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.2e-16 91.7 330 29.1
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.1e-16 90.9 181 35.4
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 1.4e-15 88.2 164 37.8
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.3e-15 87.4 98 55.1
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.7e-13 80.1 74 52.7
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.8e-12 77.8 56 60.7
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 2.7e-08 63.9 92 44.6
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 2.7e-08 63.9 92 44.6
Pp3c6_23650 Physcomitrium patens HOM05D002346 ORTHO05D002452 8.0e-08 62.4 146 34.9
MBI19_g20041_MAGBIO Magnolia biondii HOM05D002346 ORTHO05D002452 2.3e-07 60.8 195 29.2
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 3.0e-07 60.5 155 31.6
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 4.0e-07 60.1 76 44.7
Zm00001eb109190 Zea mays HOM05D001047 ORTHO05D000768 5.2e-07 59.7 133 33.8
COL.COLO4_18064 Corchorus olitorius HOM05D001047 ORTHO05D000768 6.7e-07 59.3 165 30.9
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 6.7e-07 59.3 178 28.7
Pp3c25_6330 Physcomitrium patens HOM05D002346 ORTHO05D002452 6.7e-07 59.3 167 32.3
ATR0753G139 Amborella trichopoda HOM05D002346 ORTHO05D002452 1.5e-06 58.2 167 29.9
SEGI_39984 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 2.0e-06 57.8 180 28.9
AUR62028298 Chenopodium quinoa HOM05D001047 ORTHO05D000768 4.4e-06 56.6 153 32.7
Lsat_1_v5_gn_8_45621 Lactuca sativa HOM05D002346 ORTHO05D002452 4.4e-06 56.6 139 33.1
Lj6g0004228 Lotus japonicus HOM05D001047 ORTHO05D000768 4.4e-06 56.6 143 31.5
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 4.4e-06 56.6 160 30.6
SEGI_28730 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 4.4e-06 56.6 190 29.5
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 5.7e-06 56.2 179 29.6
Gohir.D12G270600 Gossypium hirsutum HOM05D002346 ORTHO05D002452 7.5e-06 55.8 145 33.1
Mapoly0097s0021 Marchantia polymorpha HOM05D002346 ORTHO05D002452 7.5e-06 55.8 151 31.8
Zm00001eb327450 Zea mays HOM05D001047 ORTHO05D000768 7.5e-06 55.8 144 33.3
Ah.09g229090 Amaranthus hybridus HOM05D001047 ORTHO05D000768 9.7e-06 55.5 158 30.4
AagrBONN_evm.TU.Sc2ySwM_117.2255 Anthoceros agrestis HOM05D002346 ORTHO05D002452 9.7e-06 55.5 162 30.2
HanXRQChr12g0377791 Helianthus annuus HOM05D002346 ORTHO05D002452 9.7e-06 55.5 137 35.0


User provided reference genes

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