Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 3.0e-58 228.4 126 100.0
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 2.8e-43 178.7 126 81.0
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.4e-42 176.4 126 81.0
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 3.1e-42 175.3 126 79.4
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 3.5e-30 135.2 100 76.0
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 3.3e-28 128.6 118 68.6
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 1.5e-25 119.8 123 62.6
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.5e-25 119.8 122 63.1
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 7.6e-25 117.5 126 64.3
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 9.9e-25 117.1 124 58.9
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.7e-24 116.3 126 63.5
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 2.2e-24 115.9 126 63.5
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 2.9e-24 115.5 126 62.7
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 8.4e-24 114.0 126 62.7
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 1.1e-23 113.6 123 62.6
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 1.4e-23 113.2 119 64.7
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 2.4e-23 112.5 123 60.2
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 4.2e-23 111.7 122 59.8
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 5.4e-23 111.3 123 55.3
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 7.1e-23 110.9 123 59.3
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 9.3e-23 110.5 127 61.4
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.6e-22 109.8 117 64.1
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 2.1e-22 109.4 123 61.8
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 2.7e-22 109.0 116 63.8
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 3.5e-22 108.6 127 63.8
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 7.8e-22 107.5 126 58.7
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 1.7e-21 106.3 123 61.8
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.3e-21 105.9 118 61.9
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 2.3e-21 105.9 118 61.9
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 3.0e-21 105.5 129 59.7
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 3.0e-21 105.5 127 57.5
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 3.9e-21 105.1 108 68.5
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 6.6e-21 104.4 126 56.3
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 8.7e-21 104.0 126 57.1
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 8.7e-21 104.0 126 57.1
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 1.5e-20 103.2 123 56.9
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 1.9e-20 102.8 123 57.7
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 2.5e-20 102.4 126 57.9
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 4.3e-20 101.7 123 58.5
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 5.6e-20 101.3 123 56.1
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 7.3e-20 100.9 125 56.0
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 1.3e-19 100.1 129 53.5
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 2.1e-19 99.4 111 58.6
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 2.8e-19 99.0 128 57.8
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 4.8e-19 98.2 134 57.5
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 1.4e-18 96.7 103 62.1
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 5.3e-18 94.7 125 57.6
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 6.9e-18 94.4 124 55.6
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 9.0e-18 94.0 131 55.0
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 9.0e-18 94.0 124 53.2
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.0e-18 94.0 124 53.2
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.0e-18 94.0 124 53.2
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.2e-17 93.6 124 53.2
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.2e-17 93.6 129 53.5
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.5e-17 93.2 125 58.4
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 1.5e-17 93.2 126 52.4
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 2.0e-17 92.8 68 80.9
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 3.4e-17 92.0 129 51.9
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 5.8e-17 91.3 125 56.0
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 7.6e-17 90.9 123 52.8
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 9.9e-17 90.5 120 52.5
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 9.9e-17 90.5 129 51.2
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.7e-16 89.7 125 55.2
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 2.2e-16 89.4 128 50.0
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 2.9e-16 89.0 113 56.6
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 3.8e-16 88.6 126 53.2
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 3.8e-16 88.6 123 53.7
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.1e-15 87.0 123 49.6
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 1.1e-15 87.0 125 55.2
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 1.4e-15 86.7 125 54.4
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 2.4e-15 85.9 123 54.5
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 2.4e-15 85.9 127 53.5
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 4.2e-15 85.1 123 49.6
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 5.4e-15 84.7 125 53.6
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 5.4e-15 84.7 127 48.8
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 2.1e-14 82.8 125 52.8
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 3.5e-14 82.0 126 54.0
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 4.6e-14 81.6 108 56.5
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 7.9e-14 80.9 112 50.9
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 7.9e-14 80.9 104 52.9
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 7.9e-14 80.9 103 51.5
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.3e-13 80.1 131 50.4
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 1.3e-13 80.1 123 48.0
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 3.0e-13 79.0 69 66.7
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 3.9e-13 78.6 123 47.2
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 5.1e-13 78.2 124 53.2
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 1.9e-12 76.3 129 51.2
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 2.5e-12 75.9 128 53.1
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 2.5e-12 75.9 125 52.0
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 3.3e-12 75.5 124 53.2
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 3.3e-12 75.5 124 53.2
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 3.3e-12 75.5 126 50.0
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 3.3e-12 75.5 129 51.9
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 3.3e-12 75.5 126 53.2
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 4.3e-12 75.1 125 52.8
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 5.6e-12 74.7 125 50.4
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 9.6e-12 73.9 129 51.9
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 9.6e-12 73.9 67 62.7
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 1.3e-11 73.6 136 47.8
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 1.6e-11 73.2 103 52.4
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 2.1e-11 72.8 52 78.8
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 2.1e-11 72.8 52 78.8
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 2.8e-11 72.4 124 51.6
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 2.8e-11 72.4 124 51.6
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 3.6e-11 72.0 125 49.6
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 4.8e-11 71.6 124 48.4
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 4.8e-11 71.6 124 48.4
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 8.1e-11 70.9 125 48.8
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 1.1e-10 70.5 125 48.8
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 1.4e-10 70.1 129 45.7
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.1e-10 68.9 48 79.2
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.7e-08 63.2 65 60.0
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 2.4e-07 59.3 113 42.5
C04p29800 Brassica napus HOM05D006797 ORTHO05D007696 5.5e-07 58.2 85 48.2
SMO167G0044 Selaginella moellendorffii HOM05D006797 ORTHO05D007696 1.6e-06 56.6 125 39.2
BcaC02g10358 Brassica carinata HOM05D006797 ORTHO05D007696 2.1e-06 56.2 105 43.8
Mapoly0051s0054 Marchantia polymorpha HOM05D006797 ORTHO05D007696 2.1e-06 56.2 125 40.8
PGSC0003DMG400034320 Solanum tuberosum HOM05D001388 ORTHO05D001234 2.1e-06 56.2 66 56.1
BolC9t58594H Brassica oleracea HOM05D006797 ORTHO05D007696 3.5e-06 55.5 74 52.7


User provided reference genes

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