Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 5.3e-176 620.9 319 100.0
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.9e-136 489.6 290 89.7
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.5e-133 479.9 290 88.3
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 8.1e-132 474.2 291 86.9
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 3.4e-130 468.8 307 83.4
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.2e-129 466.1 290 86.2
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 3.4e-122 442.2 245 92.7
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 6.9e-107 391.3 298 72.5
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 9.0e-107 391.0 303 71.0
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 9.0e-107 391.0 304 71.4
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 4.5e-106 388.7 265 78.1
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 9.9e-106 387.5 301 71.4
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.3e-105 387.1 265 78.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 4.9e-105 385.2 300 71.7
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 6.4e-105 384.8 221 88.7
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 1.4e-104 383.6 298 71.5
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 3.2e-104 382.5 250 80.8
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 4.2e-104 382.1 301 70.1
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 1.6e-103 380.2 249 79.5
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-103 379.4 248 80.2
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.7e-103 379.4 248 80.2
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 3.5e-103 379.0 301 69.1
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 1.0e-102 377.5 252 79.8
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 1.3e-102 377.1 301 69.1
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 2.3e-102 376.3 290 72.1
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 5.1e-102 375.2 286 72.4
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 6.7e-102 374.8 299 68.6
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.1e-101 374.0 293 72.0
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.5e-101 373.6 279 72.8
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 1.9e-101 373.2 298 69.8
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.9e-101 373.2 296 69.3
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 2.5e-101 372.9 255 79.2
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 4.3e-101 372.1 290 71.0
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 5.6e-101 371.7 296 68.9
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 9.6e-101 370.9 292 71.2
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.6e-100 370.2 297 69.4
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 2.1e-100 369.8 254 77.6
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 2.1e-100 369.8 302 70.5
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 3.7e-100 369.0 290 71.0
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 3.7e-100 369.0 284 72.2
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 3.7e-100 369.0 301 68.4
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 6.2e-100 368.2 297 69.0
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 8.1e-100 367.9 297 70.0
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 1.1e-99 367.5 297 69.0
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 1.4e-99 367.1 306 68.0
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.4e-99 367.1 297 68.7
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.8e-99 366.7 292 69.9
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 1.8e-99 366.7 252 77.4
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 2.4e-99 366.3 301 68.4
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 2.4e-99 366.3 289 70.2
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 3.1e-99 365.9 259 75.3
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 4.0e-99 365.5 300 68.3
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 4.0e-99 365.5 275 73.1
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 9.0e-99 364.4 242 78.5
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.5e-98 363.6 226 82.7
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.0e-98 363.2 277 72.2
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.6e-98 362.8 289 69.9
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.4e-98 362.5 303 67.3
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 5.8e-98 361.7 303 66.7
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 5.8e-98 361.7 289 70.9
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.3e-97 360.5 308 65.6
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 1.7e-97 360.1 280 71.1
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.2e-97 359.8 303 67.0
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 2.9e-97 359.4 297 66.7
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 3.8e-97 359.0 306 66.7
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 3.8e-97 359.0 306 66.0
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 3.8e-97 359.0 306 66.0
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 3.8e-97 359.0 344 60.2
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 4.9e-97 358.6 305 65.6
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 6.5e-97 358.2 296 69.6
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 2.5e-96 356.3 303 66.7
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 2.5e-96 356.3 239 79.5
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 3.2e-96 355.9 303 66.3
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.2e-96 355.9 301 66.1
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 3.2e-96 355.9 295 66.4
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.2e-96 355.9 309 63.8
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 4.2e-96 355.5 308 64.6
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 4.2e-96 355.5 305 66.6
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 4.2e-96 355.5 306 65.7
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 7.1e-96 354.8 303 66.0
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 7.1e-96 354.8 303 66.0
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 7.1e-96 354.8 294 67.7
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 9.3e-96 354.4 222 82.9
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 2.1e-95 353.2 259 74.9
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 3.5e-95 352.4 252 74.2
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.5e-95 352.4 309 63.8
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 4.6e-95 352.1 303 65.7
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.3e-94 350.5 303 65.3
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 3.0e-94 349.4 254 74.0
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 6.7e-94 348.2 300 65.7
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.9e-93 346.7 306 63.1
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 3.3e-93 345.9 256 73.0
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 1.4e-91 340.5 291 65.3
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 5.3e-91 338.6 262 70.6
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 9.0e-91 337.8 224 76.3
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.0e-90 336.7 224 75.9
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.3e-89 334.0 274 68.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 5.0e-89 332.0 357 57.1
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 8.4e-89 331.3 202 82.2
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 8.4e-89 331.3 274 68.2
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 8.4e-89 331.3 296 65.2
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.9e-88 330.1 303 63.7
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.2e-88 329.3 206 80.6
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 3.2e-88 329.3 254 70.5
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 5.5e-88 328.6 248 69.8
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 7.2e-88 328.2 298 64.4
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.2e-87 327.4 206 79.6
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.6e-87 327.0 206 79.6
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 2.1e-87 326.6 203 79.8
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.3e-86 323.9 206 78.6
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.8e-86 323.6 323 58.5
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 1.8e-86 323.6 206 78.2
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 3.0e-86 322.8 198 81.8
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 3.0e-86 322.8 203 78.3
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 3.9e-86 322.4 206 78.2
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 3.9e-86 322.4 218 76.1
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 3.9e-86 322.4 218 76.1
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 3.9e-86 322.4 298 63.8
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.1e-85 320.9 235 73.2
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.9e-85 320.1 257 67.7
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 4.3e-85 318.9 203 79.3
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 4.3e-85 318.9 203 79.3
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 7.4e-85 318.2 198 80.8
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 7.4e-85 318.2 198 80.3
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 7.4e-85 318.2 198 80.8
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 7.4e-85 318.2 198 80.8
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 7.4e-85 318.2 198 80.8
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 7.4e-85 318.2 321 55.5
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 2.1e-79 300.1 291 58.8
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.1e-75 287.7 253 65.6
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 6.9e-75 285.0 251 61.4
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 5.9e-74 282.0 162 88.3
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.0e-73 281.2 233 68.2
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.6e-69 266.5 224 66.1
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 3.8e-65 252.7 187 73.8
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 5.3e-59 232.3 134 88.1
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 7.0e-59 231.9 162 76.5
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.6e-55 220.7 200 55.0
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 6.1e-55 218.8 197 57.4
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.0e-54 218.0 197 56.9
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.2e-42 177.9 184 48.4
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 7.5e-29 132.1 102 70.6
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 4.3e-24 116.3 102 54.9
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 1.7e-20 104.4 73 71.2
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 6.4e-20 102.4 101 55.4
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 8.3e-20 102.1 53 92.5
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-19 101.7 101 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 5.4e-19 99.4 106 50.0
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 9.2e-19 98.6 109 50.5
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 2.7e-18 97.1 141 41.1
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.3e-17 94.7 101 52.5
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 3.0e-17 93.6 101 53.5
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 3.9e-17 93.2 61 77.0
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-16 90.5 56 80.4
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 2.5e-16 90.5 55 80.0
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 4.0e-14 83.2 53 73.6
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 1.2e-13 81.6 55 74.5
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.5e-08 63.9 40 75.0
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 4.7e-07 59.7 60 46.7
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 8.1e-07 58.9 57 54.4
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 6.8e-06 55.8 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 6.8e-06 55.8 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 6.8e-06 55.8 28 92.9


User provided reference genes

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