Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1948.3 994 100.0
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1703.3 997 86.8
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1686.4 1014 84.3
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1453.3 940 77.1
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1428.7 970 75.5
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1413.7 979 75.2
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1411.7 1012 72.8
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1404.0 997 72.9
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1389.8 951 74.1
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1379.0 967 75.1
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1355.5 1013 71.3
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1346.6 1009 71.1
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1342.0 961 71.4
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1332.0 946 72.8
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1323.9 967 71.5
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1318.9 937 72.1
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1318.5 1010 67.9
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1309.7 1022 68.7
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1309.7 963 71.7
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1296.2 1011 68.5
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1295.8 958 70.1
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1283.9 968 67.9
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1283.5 968 67.9
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1282.7 967 70.6
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1276.2 1024 69.4
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1275.0 1029 68.4
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1271.1 952 68.8
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1269.2 931 71.6
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1263.1 931 71.3
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1261.1 972 67.9
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1260.7 1015 66.3
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1258.8 1012 66.2
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1257.3 944 68.8
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1253.8 945 68.6
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1253.0 872 74.2
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1249.2 936 68.6
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1247.3 950 66.2
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1246.5 1005 64.9
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1243.8 980 67.2
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1221.8 689 86.4
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1208.4 939 67.0
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1203.7 964 65.9
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1202.2 987 65.9
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1186.8 952 65.4
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1176.4 986 63.8
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1172.1 985 63.6
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1170.2 986 63.6
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1168.3 986 63.6
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 0.0e+00 1167.5 842 71.9
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1157.1 986 63.1
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1147.1 1007 62.5
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1141.3 954 63.2
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1136.7 961 62.5
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1122.8 994 61.6
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 0.0e+00 1119.8 979 60.1
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1112.4 957 61.9
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 0.0e+00 1103.2 973 61.7
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1100.1 986 61.7
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1096.6 973 61.3
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1088.6 944 61.0
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1078.9 973 60.8
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 6.8e-312 1074.7 839 63.6
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 3.4e-311 1071.6 1022 58.6
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 8.2e-311 1070.5 923 62.3
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 2.0e-309 1065.8 975 59.2
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 3.1e-307 1058.5 975 59.0
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 9.1e-307 1057.0 966 59.5
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 1.5e-306 1056.2 988 59.3
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.4e-304 1049.7 988 58.9
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 3.2e-304 1048.5 952 59.8
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 4.2e-304 1048.1 987 56.9
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 3.7e-300 1035.0 960 58.6
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 4.8e-292 1008.1 878 60.0
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 5.9e-290 1001.1 977 55.9
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 3.4e-285 985.3 970 54.9
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 5.4e-283 978.0 970 54.9
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 1.0e-281 973.8 977 54.0
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 8.6e-281 970.7 980 54.4
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 8.6e-281 970.7 973 54.0
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 4.7e-279 964.9 530 86.2
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.0e-278 963.8 970 54.3
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.0e-278 963.8 970 54.3
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 7.5e-277 957.6 980 52.9
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 4.1e-275 951.8 976 53.6
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 5.4e-275 951.4 972 53.8
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 9.2e-275 950.7 857 58.3
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 2.9e-273 945.7 964 53.6
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 2.9e-273 945.7 964 53.6
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 5.0e-265 918.3 966 52.4
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 1.2e-263 913.7 950 52.9
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.2e-263 913.7 782 61.5
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 4.7e-263 911.8 966 52.1
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 1.1e-262 910.6 969 52.7
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 5.2e-262 908.3 972 52.2
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.3e-254 882.9 991 50.8
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.7e-252 876.7 946 53.2
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 2.3e-249 866.3 824 54.0
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 1.5e-248 863.6 966 50.3
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.0e-246 855.5 535 75.5
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.7e-242 842.8 766 58.6
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 4.6e-242 842.0 540 74.6
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 2.6e-229 799.7 1002 47.4
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.1e-219 767.7 696 55.5
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 2.1e-202 710.3 644 57.5
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 6.8e-169 599.0 395 74.7
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 3.0e-161 573.5 664 50.6
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 4.1e-150 536.6 469 55.9
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 2.6e-144 517.3 483 62.5
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 1.6e-130 471.5 406 56.7
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 2.2e-111 407.9 409 61.1
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.1e-89 334.3 451 46.6
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.3e-81 307.0 322 50.3
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.4e-57 229.2 755 27.8
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 4.4e-51 207.6 151 62.3
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.2e-48 199.5 292 44.9
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.2e-44 184.1 448 32.1
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.2e-44 184.1 448 32.1
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.8e-44 183.7 375 34.4
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 6.8e-44 183.7 375 33.9
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 9.8e-43 179.9 186 51.6
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.9e-33 149.1 382 29.3
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 6.8e-28 130.6 316 29.1
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 2.6e-27 128.6 406 28.8
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.9e-19 100.1 364 28.6
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-18 99.8 301 28.9
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.2e-16 93.2 110 51.8
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.3e-14 84.7 444 21.6
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.8e-13 82.0 66 65.2
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 4.9e-10 71.2 60 71.7
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.1e-08 65.9 345 21.2
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.1e-08 65.9 350 22.6
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 2.7e-08 65.5 168 29.2
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.3e-07 62.4 295 22.7
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 3.9e-07 61.6 151 28.5
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 6.6e-07 60.8 99 32.3
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 1.9e-06 59.3 88 36.4
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 2.5e-06 58.9 71 35.2
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 4.3e-06 58.2 89 31.5
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 5.6e-06 57.8 76 36.8
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 5.6e-06 57.8 71 35.2
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 7.3e-06 57.4 71 38.0
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 9.6e-06 57.0 73 34.2
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 9.6e-06 57.0 77 33.8


User provided reference genes

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