Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 9.3e-116 420.2 214 100.0
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.6e-78 295.8 190 82.6
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.3e-77 293.5 190 82.1
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 8.5e-77 290.8 190 82.1
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.3e-58 229.6 194 68.0
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 6.8e-58 228.0 189 68.3
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 3.4e-57 225.7 190 70.0
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 4.4e-57 225.3 190 67.9
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 1.7e-56 223.4 186 68.3
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 1.7e-56 223.4 196 65.3
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.2e-56 223.0 189 66.7
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 2.2e-56 223.0 202 63.4
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 6.3e-56 221.5 197 63.5
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 6.3e-56 221.5 198 65.2
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 8.3e-56 221.1 187 65.8
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 8.3e-56 221.1 189 67.7
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 4.1e-55 218.8 180 67.8
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.2e-54 217.2 203 61.1
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.0e-53 214.2 199 60.8
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 2.2e-53 213.0 168 69.6
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 2.2e-53 213.0 140 78.6
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.2e-52 209.1 158 69.0
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 4.2e-52 208.8 187 63.1
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 4.2e-52 208.8 181 63.5
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 4.2e-52 208.8 135 82.2
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 9.4e-52 207.6 141 77.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.2e-51 207.2 200 60.5
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 1.6e-51 206.8 129 80.6
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 1.6e-51 206.8 179 62.6
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.1e-51 204.9 160 69.4
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 6.1e-51 204.9 183 62.3
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.0e-50 204.1 140 74.3
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 1.4e-50 203.8 195 62.1
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.8e-50 203.4 149 71.8
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.8e-50 203.4 179 62.0
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 3.0e-50 202.6 141 73.0
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 4.0e-50 202.2 189 61.4
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 5.2e-50 201.8 179 59.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 5.2e-50 201.8 179 61.5
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 2.0e-49 199.9 129 78.3
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 3.4e-49 199.1 140 72.1
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 4.4e-49 198.7 190 58.9
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 5.7e-49 198.4 141 71.6
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 7.5e-49 198.0 197 59.9
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.3e-48 197.2 139 72.7
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 2.2e-48 196.4 183 57.9
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.2e-48 196.4 191 61.8
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 4.9e-48 195.3 197 58.9
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 6.3e-48 194.9 179 59.2
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 6.3e-48 194.9 117 82.1
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 6.3e-48 194.9 181 60.8
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 8.3e-48 194.5 137 71.5
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 1.1e-47 194.1 129 76.7
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.4e-47 193.7 181 59.1
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.4e-47 193.7 193 57.5
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 4.1e-47 192.2 188 58.0
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 4.1e-47 192.2 183 59.0
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 5.4e-47 191.8 201 56.2
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.7e-46 189.5 182 58.8
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 4.5e-46 188.7 97 88.7
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 4.5e-46 188.7 166 65.7
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 7.7e-46 188.0 174 59.8
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 7.7e-46 188.0 174 59.8
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 7.7e-46 188.0 187 55.6
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.7e-45 186.8 187 60.4
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 2.9e-45 186.0 164 61.6
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 2.9e-45 186.0 186 58.6
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 2.9e-45 186.0 140 72.9
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 5.0e-45 185.3 181 60.8
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 8.6e-45 184.5 164 61.0
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 8.6e-45 184.5 164 61.0
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 8.6e-45 184.5 164 61.0
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-44 184.1 146 68.5
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 4.3e-44 182.2 176 58.5
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 5.6e-44 181.8 140 69.3
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 9.5e-44 181.0 107 81.3
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 9.5e-44 181.0 105 79.0
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 1.2e-43 180.6 140 62.9
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.6e-43 180.3 126 71.4
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 2.1e-43 179.9 178 59.6
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 6.1e-43 178.3 133 67.7
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.4e-42 177.2 181 58.6
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 4.0e-42 175.6 192 56.8
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 8.9e-42 174.5 135 65.9
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.2e-40 169.9 105 76.2
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 9.2e-39 164.5 134 62.7
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 3.5e-38 162.5 82 93.9
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 4.6e-38 162.2 106 75.5
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.0e-37 161.0 134 64.2
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 1.3e-37 160.6 102 71.6
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 1.7e-37 160.2 163 59.5
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 1.7e-37 160.2 102 71.6
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.6e-37 157.9 186 55.9
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 2.5e-36 156.4 105 74.3
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 2.3e-34 149.8 164 54.9
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.3e-34 149.8 170 53.5
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 5.8e-33 145.2 121 60.3
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 2.9e-32 142.9 97 70.1
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 1.1e-31 141.0 75 84.0
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.7e-29 133.7 130 52.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.8e-27 126.3 97 57.7
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.6e-27 125.9 136 50.0
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.9e-23 113.6 91 54.9
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 4.1e-23 112.5 122 54.9
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.2e-22 110.9 105 64.8
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.6e-22 110.5 73 75.3
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.8e-22 108.2 91 65.9
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.8e-22 108.2 91 65.9
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.8e-22 108.2 91 65.9
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 7.8e-22 108.2 124 46.0
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 1.0e-21 107.8 81 65.4
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.7e-21 107.1 134 52.2
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.1e-20 104.4 49 89.8
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.5e-20 104.0 61 85.2
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.9e-20 103.6 88 67.0
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 2.8e-19 99.8 89 55.1
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 2.8e-19 99.8 49 93.9
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 2.3e-18 96.7 71 69.0
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.7e-16 90.5 48 85.4
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.3e-13 80.9 139 36.0
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-13 80.1 48 70.8
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 2.8e-11 73.2 41 80.5
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 1.8e-10 70.5 113 46.0
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 6.4e-08 62.0 100 44.0
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 1.1e-07 61.2 53 66.0
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 1.4e-07 60.8 107 43.0
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 9.3e-07 58.2 40 72.5
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 2.1e-06 57.0 115 41.7
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 4.6e-06 55.8 81 45.7
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 4.6e-06 55.8 81 45.7
Thhalv10027121m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 6.0e-06 55.5 100 39.0


User provided reference genes

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