Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 0.0e+00 1332.8 678 100.0
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 0.0e+00 1257.3 678 92.8
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 0.0e+00 1209.1 678 88.6
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 0.0e+00 1204.5 678 88.2
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 0.0e+00 1202.6 678 88.2
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 0.0e+00 1101.7 666 82.7
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 0.0e+00 1086.6 676 80.8
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 0.0e+00 1081.2 679 79.2
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 0.0e+00 1079.7 673 80.4
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 0.0e+00 1078.9 673 81.0
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.4e-311 1072.4 679 78.9
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 7.8e-310 1066.6 696 78.6
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 7.8e-310 1066.6 680 78.2
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 3.9e-309 1064.3 679 78.6
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.6e-309 1063.5 679 79.1
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.2e-307 1059.3 677 80.1
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.1e-307 1058.5 677 80.1
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.4e-305 1050.8 691 78.4
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 7.6e-305 1050.0 678 79.9
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 9.9e-305 1049.7 670 79.0
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.9e-304 1047.3 686 78.7
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 3.2e-303 1044.6 616 84.1
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.9e-300 1035.4 649 78.6
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 5.6e-300 1033.9 673 78.2
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 4.8e-299 1030.8 673 77.9
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 8.1e-299 1030.0 695 76.0
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 8.1e-299 1030.0 654 77.2
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 6.9e-298 1026.9 673 78.0
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 7.6e-297 1023.5 679 77.0
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 2.9e-296 1021.5 673 77.7
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 2.9e-296 1021.5 681 75.8
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 2.4e-295 1018.5 656 78.4
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 2.4e-295 1018.5 677 75.3
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 4.2e-295 1017.7 672 77.1
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 2.7e-294 1015.0 680 75.6
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 3.5e-294 1014.6 663 77.7
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.9e-292 1008.8 685 74.9
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 2.5e-292 1008.4 680 75.6
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 5.6e-292 1007.3 662 77.3
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 7.3e-292 1006.9 680 74.9
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.4e-290 1002.7 654 76.6
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 3.4e-289 998.0 656 76.1
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 1.7e-288 995.7 656 75.8
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 2.9e-288 995.0 657 75.5
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 1.9e-287 992.3 681 74.3
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 3.2e-287 991.5 681 74.2
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 4.2e-287 991.1 604 82.5
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 4.6e-286 987.6 679 73.9
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 1.3e-285 986.1 601 81.7
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 3.0e-285 984.9 656 75.0
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.1e-284 983.0 613 80.8
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 1.5e-284 982.6 649 74.3
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 2.5e-284 981.9 679 73.6
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.1e-282 976.5 652 74.8
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 1.8e-282 975.7 606 80.5
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.5e-281 972.6 653 73.4
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.6e-281 971.8 673 73.4
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.7e-280 969.1 654 74.3
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.9e-280 967.6 656 73.9
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 6.5e-280 967.2 679 73.0
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 3.2e-279 964.9 678 72.3
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 9.3e-279 963.4 651 73.4
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.2e-278 963.0 653 74.0
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 2.1e-278 962.2 651 73.4
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 3.5e-278 961.4 660 72.3
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 6.0e-278 960.7 665 73.2
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.0e-277 959.9 651 73.1
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 3.9e-277 958.0 661 72.8
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.9e-276 955.7 649 73.5
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 9.6e-276 953.4 661 72.3
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.3e-275 953.0 662 72.7
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 9.0e-274 946.8 661 72.2
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 9.0e-274 946.8 651 74.0
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 9.0e-274 946.8 675 71.4
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.5e-273 944.5 654 71.7
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 2.2e-272 942.2 662 72.2
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.2e-272 942.2 653 73.2
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.9e-272 941.8 617 75.4
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 1.4e-271 939.5 653 72.0
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 7.2e-271 937.2 651 73.0
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 4.6e-270 934.5 651 71.9
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 4.6e-270 934.5 545 85.1
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 6.1e-270 934.1 655 72.8
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 7.9e-270 933.7 656 72.0
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.3e-269 932.2 602 76.7
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 1.5e-268 929.5 610 77.0
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 1.1e-263 913.3 603 74.0
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 4.2e-263 911.4 603 75.8
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 2.1e-262 909.1 741 63.6
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.0e-261 906.7 604 73.2
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.1e-260 903.3 668 69.8
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 3.3e-260 901.7 651 70.8
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 3.4e-257 891.7 607 73.5
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.1e-250 870.2 471 92.1
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 4.1e-250 868.2 650 69.7
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 4.8e-235 818.1 627 66.3
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 7.0e-234 814.3 517 77.2
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 9.1e-234 813.9 652 66.1
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 2.6e-228 795.8 675 61.8
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 1.3e-227 793.5 726 56.9
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 3.3e-223 778.9 674 62.8
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.2e-220 770.4 752 52.7
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.4e-220 768.8 741 53.4
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 3.5e-217 758.8 827 49.8
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 6.2e-214 748.0 845 47.7
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.9e-207 726.5 459 78.0
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 4.9e-203 711.8 592 61.7
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 3.9e-192 675.6 659 53.3
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.9e-186 656.8 423 77.1
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.4e-173 613.2 541 61.2
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.7e-168 595.1 439 71.8
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 2.0e-164 583.6 549 54.5
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 8.0e-129 465.3 311 76.2
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.3e-126 455.7 398 61.8
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.4e-117 427.9 276 76.4
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.8e-110 403.7 345 60.3
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.1e-98 365.2 256 71.1
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 7.0e-93 345.9 215 77.7
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.9e-85 321.2 345 52.2
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 2.1e-81 307.8 555 38.6
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.1e-64 252.3 153 78.4
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.1e-45 189.1 137 68.6
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.1e-44 184.9 140 63.6
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 1.0e-38 166.0 445 30.3
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 3.2e-21 107.8 76 76.3
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 2.4e-16 91.7 67 73.1
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 6.7e-11 73.6 49 77.6
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.1e-08 66.2 47 66.0
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 2.0e-07 62.0 38 78.9
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.7e-07 61.6 48 60.4


User provided reference genes

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