Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 3.0e-165 585.1 295 100.0
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 4.7e-126 454.9 275 85.8
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.8e-120 435.3 278 81.3
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.9e-119 433.0 278 81.3
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 4.2e-119 431.8 278 80.9
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 2.0e-100 369.8 263 72.2
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 4.1e-98 362.1 254 71.7
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 2.1e-97 359.8 276 68.1
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 2.1e-97 359.8 257 69.3
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.5e-95 353.6 267 67.4
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 5.6e-95 351.7 272 66.9
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.1e-94 349.7 256 69.1
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 8.1e-94 347.8 282 63.8
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 3.1e-93 345.9 270 68.1
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 5.2e-93 345.1 282 63.1
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.0e-92 343.2 263 67.3
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 5.8e-92 341.7 272 66.2
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 2.9e-91 339.3 273 65.6
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 8.3e-91 337.8 267 67.0
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.1e-90 337.4 287 63.1
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 4.6e-89 332.0 261 65.9
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 6.0e-89 331.6 272 64.7
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 7.8e-89 331.3 270 64.8
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.9e-88 328.9 263 65.4
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 8.6e-88 327.8 262 65.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.9e-87 326.6 285 61.4
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 5.6e-87 325.1 280 61.4
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 6.2e-86 321.6 300 57.7
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 5.2e-85 318.5 281 60.5
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 2.0e-84 316.6 257 62.3
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 2.0e-84 316.6 273 60.1
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 7.6e-84 314.7 289 61.2
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 7.6e-84 314.7 274 59.1
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-83 313.9 263 60.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 2.2e-83 313.2 266 62.8
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.2e-83 313.2 285 60.0
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.4e-82 310.5 256 62.1
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.4e-82 310.5 276 59.4
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.9e-82 310.1 276 59.8
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.9e-82 310.1 285 59.6
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.4e-82 309.7 256 64.1
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 5.4e-82 308.5 266 62.8
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 7.1e-82 308.1 276 58.7
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 7.1e-82 308.1 283 58.0
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.2e-81 307.4 274 58.8
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.6e-81 307.0 280 57.5
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 2.7e-81 306.2 263 59.7
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.0e-80 304.3 263 58.6
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 3.0e-80 302.8 258 60.5
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 5.1e-80 302.0 255 58.4
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 5.6e-79 298.5 273 54.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 5.6e-79 298.5 258 58.5
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.2e-78 297.4 280 56.4
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 2.8e-78 296.2 259 61.4
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 3.6e-78 295.8 278 57.6
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 8.1e-78 294.7 278 57.2
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.1e-77 294.3 270 59.3
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.1e-77 294.3 256 61.3
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 1.1e-77 294.3 271 59.0
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.4e-77 293.9 271 59.0
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.8e-77 293.5 298 55.0
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 3.1e-77 292.7 255 57.3
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 5.3e-77 292.0 256 61.3
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 5.3e-77 292.0 256 60.5
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 6.9e-77 291.6 253 57.3
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 2.6e-76 289.7 257 59.9
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 4.4e-76 288.9 261 59.0
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 7.6e-76 288.1 264 60.2
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 2.9e-75 286.2 271 57.6
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 4.9e-75 285.4 256 57.8
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 4.9e-75 285.4 330 52.4
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 6.4e-75 285.0 274 55.5
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 8.4e-75 284.6 257 56.0
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.1e-74 284.3 258 56.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 4.6e-73 278.9 278 54.0
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 6.0e-73 278.5 266 56.0
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 5.1e-72 275.4 278 54.3
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 8.7e-72 274.6 268 56.0
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.1e-71 274.2 273 55.7
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.5e-71 273.9 290 52.4
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.6e-70 269.2 299 49.5
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.8e-69 266.9 202 66.3
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 9.0e-69 264.6 266 56.4
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 9.0e-69 264.6 283 52.7
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 4.5e-68 262.3 257 52.9
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.1e-66 257.7 284 51.1
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 7.1e-66 255.0 284 51.4
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 6.0e-65 251.9 270 53.7
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.9e-65 251.5 248 55.2
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.0e-64 251.1 263 53.2
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.8e-62 243.0 285 49.5
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 4.9e-59 232.3 266 50.4
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 8.4e-59 231.5 288 49.3
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 4.2e-58 229.2 257 49.0
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 4.2e-58 229.2 203 58.1
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 5.5e-58 228.8 277 46.6
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 3.9e-56 222.6 272 47.4
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 7.4e-55 218.4 273 46.2
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 2.1e-54 216.9 293 45.7
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 3.7e-54 216.1 293 43.0
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 8.2e-54 214.9 185 60.5
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.1e-53 214.5 248 49.6
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 1.5e-52 210.7 276 44.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 4.9e-51 205.7 177 63.3
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 9.4e-42 174.9 165 52.7
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.5e-39 167.5 183 55.7
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 6.3e-38 162.2 229 42.8
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 4.5e-36 156.0 135 57.0
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.4e-31 138.7 193 42.5
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.4e-29 134.4 119 58.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.4e-29 134.4 254 36.2
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.6e-28 130.2 157 48.4
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 3.8e-27 126.3 266 35.3
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.2e-26 122.9 136 52.2
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.7e-25 119.4 179 40.8
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.7e-25 119.4 179 40.8
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.4e-24 117.9 184 42.4
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 2.3e-24 117.1 154 46.8
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 8.8e-24 115.2 206 38.8
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 2.6e-23 113.6 84 67.9
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.3e-22 111.3 165 41.8
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 5.9e-20 102.4 130 40.0
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 2.7e-17 93.6 86 52.3
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 2.3e-16 90.5 167 37.1
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.0e-15 87.4 61 68.9
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.4e-15 86.7 193 34.2
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.4e-15 86.7 193 34.2
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 5.7e-15 85.9 214 34.6
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 1.4e-13 81.3 65 58.5
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.4e-13 81.3 87 52.9
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.3e-13 79.3 150 36.7
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 7.0e-13 79.0 157 35.7
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 2.9e-11 73.6 178 29.8
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 7.2e-10 68.9 72 51.4
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 7.2e-10 68.9 72 51.4
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.1e-09 67.4 62 51.6
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 4.7e-09 66.2 174 31.0
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.8e-08 64.3 133 36.1
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 5.2e-08 62.8 140 32.1
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 5.7e-07 59.3 67 53.7


User provided reference genes

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