Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 1.3e-288 995.7 506 100.0
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 2.2e-163 579.7 508 65.6
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 4.9e-123 445.7 509 54.8
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 6.9e-85 318.9 511 44.0
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.7e-75 287.7 511 41.1
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 5.0e-67 259.6 484 38.4
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.3e-64 250.8 485 38.4
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 5.3e-61 239.6 482 38.2
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 3.4e-60 236.9 268 54.1
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 9.4e-58 228.8 457 36.3
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 7.4e-55 219.2 449 36.1
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 3.1e-53 213.8 525 35.8
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 2.0e-52 211.1 494 35.6
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 1.1e-50 205.3 517 35.6
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 9.4e-50 202.2 518 35.1
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.6e-49 201.4 510 34.7
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.1e-49 199.5 523 34.0
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.7e-48 196.1 524 34.4
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.3e-46 191.8 520 32.5
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 2.8e-46 190.7 522 34.3
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 1.2e-44 185.3 467 33.8
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 1.6e-44 184.9 447 34.2
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 4.5e-44 183.3 535 32.7
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 5.0e-43 179.9 454 34.6
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 5.0e-43 179.9 455 35.2
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 1.2e-39 168.7 466 34.3
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 9.7e-39 165.6 472 31.6
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 1.7e-38 164.9 485 32.4
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 2.2e-38 164.5 434 34.1
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 3.7e-38 163.7 340 38.5
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 9.1e-37 159.1 500 31.4
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.0e-35 155.6 458 30.3
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 3.8e-35 153.7 448 30.4
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 8.5e-35 152.5 478 31.4
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 5.5e-34 149.8 349 34.7
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 7.2e-34 149.4 453 30.7
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 1.6e-33 148.3 495 29.3
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 5.7e-31 139.8 452 29.6
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 7.5e-31 139.4 443 28.2
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 7.5e-31 139.4 466 30.5
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 9.8e-31 139.0 452 29.0
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 1.7e-30 138.3 350 37.1
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 4.8e-30 136.7 446 29.4
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 4.8e-30 136.7 446 29.4
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 4.8e-30 136.7 476 31.3
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 6.3e-30 136.3 441 29.7
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 6.3e-30 136.3 463 27.6
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 7.0e-29 132.9 340 34.7
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 1.2e-28 132.1 565 26.5
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 1.6e-28 131.7 451 31.0
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 7.7e-28 129.4 486 29.6
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 1.7e-27 128.3 487 27.9
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 5.0e-27 126.7 443 28.0
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 5.0e-27 126.7 452 30.3
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 2.5e-26 124.4 242 38.4
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 5.5e-26 123.2 486 28.6
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 1.6e-25 121.7 479 29.9
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 1.6e-25 121.7 456 28.3
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 6.1e-25 119.8 466 30.3
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 6.1e-25 119.8 472 28.6
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 8.0e-25 119.4 457 29.3
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 8.0e-25 119.4 444 29.3
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 1.0e-24 119.0 465 28.4
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 1.0e-24 119.0 258 35.7
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.3e-24 117.9 339 32.2
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 6.8e-24 116.3 444 27.5
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 4.4e-23 113.6 444 27.3
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 4.4e-23 113.6 445 28.1
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.4e-23 113.6 339 31.0
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 7.5e-23 112.8 489 29.0
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 1.7e-22 111.7 455 29.2
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.2e-22 111.3 343 31.5
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 3.7e-22 110.5 471 28.0
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 8.3e-22 109.4 439 26.4
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 1.1e-21 109.0 451 26.4
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 1.4e-21 108.6 443 27.5
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 2.4e-21 107.8 351 31.1
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 3.1e-21 107.5 450 27.1
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 9.2e-21 105.9 448 28.1
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 4.5e-20 103.6 495 26.7
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.3e-19 102.1 448 27.5
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 1.7e-19 101.7 341 32.6
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 2.3e-19 101.3 482 27.4
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 2.3e-19 101.3 446 27.6
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 2.3e-19 101.3 397 29.0
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 2.3e-19 101.3 472 26.7
FAN18G3895 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.9e-19 100.9 370 29.5
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 5.6e-18 96.7 450 26.9
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 1.2e-17 95.5 477 28.3
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 1.2e-15 89.0 205 36.1
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 6.4e-14 83.2 343 26.8
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.8e-13 81.6 447 25.7
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 3.3e-10 70.9 166 36.1
Ciclev10023353m.g Citrus clementina HOM05D007047 ORTHO05D009177 5.6e-10 70.1 162 34.0
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 7.3e-10 69.7 197 31.5
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 2.8e-09 67.8 152 34.2
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 1.0e-08 65.9 162 32.1
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 2.3e-08 64.7 125 34.4
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 2.3e-08 64.7 94 41.5
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 6.8e-08 63.2 105 41.0
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 2.6e-07 61.2 310 26.1
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 5.8e-07 60.1 202 30.2
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 9.8e-07 59.3 57 49.1
ATR0057G113 Amborella trichopoda HOM05D007047 ORTHO05D009177 3.7e-06 57.4 150 30.0


User provided reference genes

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