Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 0.0e+00 2205.3 1121 100.0
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1740.3 1170 78.8
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1577.0 1210 71.2
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1531.2 1210 69.4
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 0.0e+00 1444.9 1205 66.6
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1295.0 1113 65.7
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1161.7 998 63.3
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1153.7 1021 62.0
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1139.4 1027 61.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1130.9 991 63.7
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1099.0 996 61.6
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1097.8 956 62.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1096.6 1020 59.2
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1095.9 1041 59.0
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1090.1 991 60.3
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1088.6 1020 59.1
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1086.2 1036 58.3
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1086.2 1008 61.1
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 0.0e+00 1076.6 1067 57.4
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 5.1e-306 1054.7 991 58.6
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 8.7e-306 1053.9 1019 57.5
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 2.5e-305 1052.4 1009 59.7
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 7.3e-305 1050.8 1021 57.5
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 1.3e-304 1050.0 1057 56.5
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 6.2e-304 1047.7 1019 57.2
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 6.2e-304 1047.7 1053 56.3
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 1.8e-303 1046.2 1019 58.1
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 2.0e-302 1042.7 1020 57.3
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.7e-301 1039.6 1028 57.4
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.4e-300 1036.6 1019 56.9
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 4.6e-299 1031.6 1144 53.5
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.0e-298 1030.4 1031 56.5
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 3.9e-298 1028.5 1140 52.5
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 3.6e-296 1021.9 1026 56.2
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 6.9e-295 1017.7 995 56.4
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 2.6e-294 1015.8 1026 55.8
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 2.4e-292 1009.2 1014 56.3
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 4.2e-292 1008.4 1027 55.7
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 4.2e-292 1008.4 992 56.6
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 1.2e-291 1006.9 993 56.5
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 4.6e-291 1005.0 1030 55.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 7.9e-291 1004.2 1017 56.1
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 1.8e-290 1003.0 1071 54.2
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 1.1e-289 1000.3 993 56.4
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 5.6e-289 998.0 1019 56.2
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 7.4e-289 997.7 1066 53.6
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 4.8e-288 995.0 993 55.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 6.2e-288 994.6 995 55.5
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 1.8e-287 993.0 1043 54.8
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 6.9e-287 991.1 1109 51.9
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-286 989.9 1020 56.1
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.3e-285 986.9 1020 56.0
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 4.9e-285 984.9 1139 51.7
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.4e-284 983.4 1027 54.7
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.4e-284 983.4 1145 50.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 5.5e-284 981.5 993 55.3
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 7.1e-284 981.1 1049 54.6
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.6e-283 979.9 993 55.2
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 4.6e-283 978.4 1007 54.9
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 4.6e-283 978.4 1007 54.9
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.6e-283 978.4 930 58.5
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.0e-282 977.2 994 55.1
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 3.0e-282 975.7 992 56.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.3e-280 970.3 1150 49.6
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.1e-279 965.3 1027 54.5
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 5.3e-279 964.9 995 54.5
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 6.9e-279 964.5 989 54.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.4e-278 962.2 1023 54.3
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 8.5e-277 957.6 927 58.0
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.2e-275 953.7 1022 53.6
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 2.1e-275 953.0 1179 49.1
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.8e-274 949.9 926 57.1
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 3.0e-274 949.1 1029 53.6
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 6.7e-274 948.0 1079 51.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 6.7e-274 948.0 1021 53.5
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 4.8e-272 941.8 1028 52.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 6.3e-272 941.4 1072 51.3
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 5.3e-271 938.3 1052 51.1
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 6.9e-271 937.9 1072 50.9
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 9.1e-271 937.6 1064 51.5
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.7e-269 933.3 996 54.5
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.2e-267 927.2 1162 47.8
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 3.7e-264 915.6 1014 52.5
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.4e-263 913.7 1059 49.7
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 4.1e-263 912.1 1058 50.9
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.0e-257 893.3 1025 52.1
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.2e-252 875.9 892 55.5
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.3e-250 869.8 1070 48.9
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 3.7e-248 862.4 1175 46.6
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.2e-235 820.8 1068 45.6
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 1.4e-234 817.4 1175 43.6
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.7e-232 810.4 1157 44.9
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 2.4e-231 806.6 844 54.3
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.2e-227 794.3 1116 44.4
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 5.7e-225 785.4 1079 45.2
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.6e-219 766.1 1043 45.5
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 7.0e-215 751.9 988 45.9
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 3.0e-213 746.5 1078 41.8
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 8.6e-213 745.0 908 48.9
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.0e-209 733.8 967 46.6
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.7e-208 729.6 551 68.4
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 6.4e-208 728.8 513 71.5
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 7.1e-199 698.7 1124 41.0
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.4e-194 683.7 954 46.1
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.3e-179 634.8 523 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 9.3e-167 592.0 966 37.7
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 2.5e-151 540.8 1029 34.8
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 5.0e-144 516.5 991 34.7
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 7.5e-132 476.1 697 43.2
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.9e-113 413.3 927 30.3
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.6e-78 297.7 432 44.7
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.9e-75 287.3 247 62.8
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 4.8e-70 270.8 302 54.3
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 7.6e-60 236.9 178 69.1
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.9e-51 208.4 174 62.1
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 3.8e-51 208.0 269 43.1
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 5.5e-42 177.6 136 67.6
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 8.2e-38 163.7 625 27.7
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 7.9e-33 147.1 105 65.7
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 7.4e-31 140.6 121 59.5
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 3.7e-30 138.3 683 21.7
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.9e-26 125.9 91 65.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 2.7e-25 122.1 132 54.5
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 8.8e-24 117.1 84 61.9
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.6e-23 115.5 116 54.3
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.3e-23 115.2 413 30.8
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 3.7e-22 111.7 121 48.8
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 7.7e-20 104.0 127 47.2
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.2e-19 102.4 120 48.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-18 99.8 125 47.2
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 2.2e-14 85.9 67 58.2
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 3.1e-13 82.0 116 42.2
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.0e-11 77.0 86 41.9
HanXRQChr01g0002611 Helianthus annuus HOM05D005400 ORTHO05D006668 1.8e-08 66.2 95 45.3
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.4e-07 61.6 59 50.8
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 7.5e-07 60.8 46 56.5


User provided reference genes

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