Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 1.3e-236 822.8 435 100.0
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 4.1e-203 711.4 441 87.8
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 7.5e-197 690.6 440 78.2
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 4.4e-181 638.3 439 74.7
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 1.6e-178 629.8 437 73.9
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 9.5e-176 620.5 446 77.1
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 8.9e-174 614.0 438 70.1
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 1.1e-171 607.1 442 75.8
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 1.1e-171 607.1 439 74.9
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 1.1e-171 607.1 456 74.1
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 1.2e-170 603.6 444 70.3
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 1.0e-169 600.5 444 70.0
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 1.7e-169 599.7 441 69.2
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 5.1e-169 598.2 442 69.9
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 6.6e-169 597.8 439 69.2
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 5.6e-168 594.7 437 68.4
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 7.3e-168 594.3 433 74.4
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 3.4e-165 585.5 438 68.3
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 4.4e-165 585.1 437 67.3
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 5.8e-165 584.7 441 68.0
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 7.5e-165 584.3 433 71.1
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 9.9e-165 583.9 457 70.7
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 2.9e-164 582.4 438 67.8
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 6.4e-164 581.3 454 65.2
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 5.4e-163 578.2 433 75.1
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 9.2e-163 577.4 439 69.7
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 3.5e-162 575.5 439 73.6
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 7.8e-162 574.3 437 68.6
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 7.8e-162 574.3 439 69.9
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 3.9e-161 572.0 442 65.2
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 5.1e-161 571.6 304 90.5
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 8.6e-161 570.9 443 70.7
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 2.1e-159 566.2 453 69.3
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 2.8e-159 565.8 459 69.3
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 8.1e-159 564.3 448 64.5
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 1.2e-157 560.5 435 64.6
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 7.6e-157 557.8 435 64.1
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 2.9e-156 555.8 439 63.6
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 1.9e-155 553.1 445 65.6
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 2.4e-155 552.7 439 62.9
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 1.2e-154 550.4 444 64.2
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 2.3e-153 546.2 436 64.4
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 3.0e-153 545.8 447 63.5
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 8.7e-153 544.3 434 63.8
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 1.5e-152 543.5 438 64.2
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 2.1e-151 539.7 453 67.3
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 6.9e-150 534.6 445 66.1
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 1.2e-149 533.9 436 64.4
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 3.4e-149 532.3 444 63.1
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 5.8e-149 531.6 442 61.8
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 2.9e-148 529.3 433 66.5
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 2.9e-148 529.3 455 62.9
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 8.4e-148 527.7 439 66.7
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 1.4e-147 526.9 439 62.0
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 1.9e-147 526.6 451 61.4
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 2.4e-147 526.2 444 61.7
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 3.2e-147 525.8 451 61.4
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 3.2e-147 525.8 447 63.8
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 5.4e-147 525.0 436 67.4
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 2.1e-146 523.1 439 61.5
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 3.5e-146 522.3 447 59.1
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 1.0e-145 520.8 436 67.0
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 8.7e-145 517.7 439 60.6
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 2.5e-144 516.2 438 62.3
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 2.5e-144 516.2 444 61.0
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 5.6e-144 515.0 441 64.9
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 2.1e-143 513.1 452 61.7
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 3.1e-142 509.2 400 66.5
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 1.5e-141 506.9 439 66.5
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 2.6e-141 506.1 412 63.3
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 3.4e-141 505.8 444 57.7
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 5.8e-141 505.0 448 60.0
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 4.9e-140 501.9 439 62.9
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 8.4e-140 501.1 300 78.3
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 2.4e-139 499.6 438 62.3
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 5.4e-139 498.4 445 60.9
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 2.1e-138 496.5 480 56.0
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 3.0e-137 492.7 435 58.6
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 1.9e-136 490.0 385 72.2
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 3.3e-136 489.2 434 62.2
ATR0829G115 Amborella trichopoda HOM05D006116 ORTHO05D007795 1.4e-134 483.8 438 58.7
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 4.5e-133 478.8 475 57.9
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 1.0e-132 477.6 514 51.4
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 2.9e-132 476.1 461 56.6
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 4.9e-132 475.3 446 60.3
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 6.4e-132 474.9 303 73.9
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 3.2e-131 472.6 303 70.6
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 3.2e-131 472.6 417 60.9
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 4.3e-128 462.2 369 71.5
HPP92_020688 Vanilla planifolia HOM05D006116 ORTHO05D007795 4.3e-120 435.6 278 74.1
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 1.4e-118 430.6 292 70.2
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 2.4e-110 403.3 346 70.2
AagrBONN_evm.TU.Sc2ySwM_368.518 Anthoceros agrestis HOM05D006116 ORTHO05D007795 5.9e-109 398.7 440 49.3
CiPaw.12G058000 Carya illinoinensis HOM05D006116 ORTHO05D007795 5.9e-109 398.7 232 80.2
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 1.1e-107 394.4 301 63.1
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 1.1e-107 394.4 301 63.1
SMO356G0030 Selaginella moellendorffii HOM05D006116 ORTHO05D007795 1.9e-107 393.7 306 61.1
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 5.1e-105 385.6 335 61.8
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 1.1e-104 384.4 351 64.1
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 2.6e-104 383.3 296 63.5
Migut.E00812 Erythranthe guttata HOM05D006116 ORTHO05D007795 2.8e-103 379.8 218 80.3
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 1.4e-102 377.5 266 67.3
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 1.0e-100 371.3 427 48.0
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 1.7e-100 370.5 371 56.6
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 1.1e-96 357.8 307 57.7
Zm00001eb319310 Zea mays HOM05D006116 ORTHO05D007795 2.4e-86 323.6 201 76.6
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 4.1e-70 269.6 208 61.5
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 4.1e-70 269.6 208 61.5
CBR_g27781 Chara braunii HOM05D006116 ORTHO05D007795 7.0e-70 268.9 268 49.6
Cre14.g631900 Chlamydomonas reinhardtii HOM05D006116 ORTHO05D007795 1.1e-67 261.5 278 43.2
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 1.7e-63 247.7 202 63.4
Atru.chr9.1147 Acer truncatum HOM05D006116 ORTHO05D007795 5.2e-57 226.1 118 84.7
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 6.4e-47 192.6 192 50.0
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 1.2e-45 188.3 259 48.3
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 1.1e-35 155.2 134 55.2
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 2.0e-32 144.4 115 61.7
EL10Ac5g12217 Beta vulgaris HOM05D006116 ORTHO05D007795 8.4e-31 139.0 80 77.5
TAR375G0859 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.7e-29 134.0 69 87.0
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 1.5e-24 118.2 101 55.4
DCAR_005654 Daucus carota HOM05D006116 ORTHO05D007795 1.4e-22 111.7 68 73.5
CAN.G507.3 Capsicum annuum HOM05D006116 ORTHO05D007795 1.6e-21 108.2 76 65.8
CDE11G0087 Ceratophyllum demersum HOM05D006116 ORTHO05D007795 3.1e-17 94.0 53 77.4
Atru.chr9.1146 Acer truncatum HOM05D006116 ORTHO05D007795 5.3e-17 93.2 107 49.5
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 4.9e-15 86.7 61 65.6
Aqoxy6G01690 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 1.8e-09 68.2 120 29.2
CiPaw.12G058200 Carya illinoinensis HOM05D006116 ORTHO05D007795 1.8e-09 68.2 86 52.3
Aqoxy7G03532 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 1.0e-07 62.4 59 44.1
BolC8t48435H Brassica oleracea HOM05D006116 ORTHO05D007795 9.3e-06 55.8 39 59.0


User provided reference genes

Program Settings