Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 0.0e+00 1290.0 649 100.0
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 0.0e+00 1165.2 648 89.4
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 0.0e+00 1126.7 648 87.5
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 0.0e+00 1123.2 648 87.2
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 0.0e+00 1122.1 648 87.3
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 2.7e-275 951.8 662 72.8
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.3e-274 949.5 658 72.9
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 7.3e-273 943.7 671 73.2
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 2.8e-272 941.8 656 73.3
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 7.6e-270 933.7 665 72.9
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 8.1e-264 913.7 657 71.4
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 2.0e-262 909.1 653 70.8
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.6e-259 899.4 635 72.8
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 4.6e-259 897.9 652 68.9
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 3.0e-258 895.2 650 69.8
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 7.3e-257 890.6 669 69.2
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 3.6e-256 888.3 650 70.0
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.2e-254 883.2 687 67.2
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 2.0e-254 882.5 652 68.7
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.6e-254 882.1 649 69.5
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 2.6e-254 882.1 650 69.8
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 3.4e-254 881.7 650 69.5
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 9.9e-254 880.2 645 70.5
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 2.1e-251 872.5 668 68.4
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 3.0e-250 868.6 655 68.4
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 6.7e-250 867.5 710 64.5
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 1.2e-246 856.7 664 67.0
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 7.1e-244 847.4 657 67.3
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 7.6e-238 827.4 658 65.0
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.0e-237 827.0 608 70.1
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.3e-237 826.6 740 60.8
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.4e-236 823.2 646 65.6
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.5e-236 822.4 620 69.4
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 2.4e-231 805.8 650 62.6
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 7.7e-230 800.8 666 63.4
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.1e-228 797.0 764 59.2
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 9.4e-228 793.9 651 64.7
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 3.6e-227 792.0 651 64.4
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 6.7e-226 787.7 695 60.4
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.1e-225 786.9 679 62.6
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 4.1e-223 778.5 683 62.7
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 7.2e-220 767.7 658 62.6
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 6.1e-219 764.6 545 71.9
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-218 763.5 622 64.5
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.0e-213 747.3 668 61.4
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.2e-208 729.6 661 60.8
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 6.3e-208 728.0 555 65.8
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.1e-204 717.2 550 67.3
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.1e-204 717.2 647 58.6
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 5.0e-197 691.8 699 57.4
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 6.5e-197 691.4 659 58.3
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.1e-196 690.6 525 68.4
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.9e-196 689.9 664 58.9
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.3e-194 682.9 526 68.1
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 8.8e-194 681.0 688 57.0
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.2e-193 680.6 688 56.8
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 2.6e-185 652.9 548 62.2
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 9.2e-183 644.4 491 70.1
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 2.5e-180 636.3 508 66.7
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 4.3e-180 635.6 654 50.8
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.6e-180 635.2 714 52.7
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 2.1e-179 633.3 486 70.8
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 1.1e-172 610.9 459 69.5
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 5.2e-170 602.1 424 72.6
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.2e-169 600.9 480 66.9
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 5.8e-169 598.6 469 67.2
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 3.9e-165 585.9 543 60.6
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 1.5e-164 583.9 496 61.7
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 7.3e-164 581.6 469 64.4
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 6.2e-163 578.6 421 70.8
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.1e-162 577.8 403 74.2
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 2.2e-160 570.1 333 81.7
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 2.5e-156 556.6 544 57.4
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 4.2e-151 539.3 464 62.5
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.0e-149 533.1 464 63.1
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-146 524.6 464 62.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.3e-136 491.1 659 44.2
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 2.5e-132 476.9 448 58.5
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.4e-130 471.1 420 59.8
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 9.0e-130 468.4 653 43.3
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 4.8e-123 446.0 646 41.2
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 9.3e-119 431.8 244 85.2
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 5.7e-100 369.4 258 71.7
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 8.5e-80 302.4 272 62.1
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 2.7e-78 297.4 173 82.7
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 7.5e-76 289.3 291 57.4
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.2e-75 287.7 168 82.1
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 1.8e-74 284.6 173 76.3
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 5.9e-73 279.6 173 74.0
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 7.7e-73 279.3 243 55.1
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 7.3e-71 272.7 332 47.0
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.2e-70 271.9 155 84.5
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 4.4e-68 263.5 192 75.0
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 2.0e-65 254.6 174 69.0
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.0e-64 252.3 176 69.3
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 2.6e-60 237.7 173 64.7
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 3.4e-60 237.3 173 64.2
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.2e-59 234.6 178 64.0
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 2.2e-59 234.6 173 64.2
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 8.3e-59 232.6 173 63.0
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 2.4e-58 231.1 173 61.8
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 5.4e-58 229.9 131 85.5
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 5.4e-58 229.9 175 63.4
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 3.5e-57 227.3 601 30.1
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 4.1e-50 203.8 115 82.6
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 7.1e-50 203.0 102 91.2
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 6.0e-49 199.9 100 92.0
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 7.8e-49 199.5 173 57.2
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 5.1e-48 196.8 237 48.9
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.2e-46 192.2 173 55.5
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 1.4e-45 188.7 133 72.2
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 1.8e-45 188.3 133 71.4
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 4.0e-45 187.2 114 86.0
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 5.2e-45 186.8 130 66.9
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 3.8e-43 180.6 869 23.2
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 2.3e-40 171.4 130 63.8
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 4.3e-39 167.2 100 81.0
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.6e-38 164.1 88 87.5
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.9e-32 144.1 137 49.6
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 2.6e-28 131.3 185 34.6
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.2e-26 124.4 78 75.6
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 4.2e-26 124.0 77 76.6
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 7.1e-26 123.2 70 82.9
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.9e-25 119.8 65 84.6
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.2e-19 101.7 69 63.8
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.3e-16 92.4 58 69.0
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 6.2e-14 83.6 56 64.3
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 3.4e-12 77.8 60 63.3
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-09 68.6 51 52.9
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 3.5e-09 67.8 43 69.8
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 7.9e-09 66.6 57 57.9
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 5.1e-08 63.9 88 43.2
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 8.7e-08 63.2 218 27.1
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 1.1e-07 62.8 254 26.0
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 1.5e-07 62.4 260 22.7
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 1.5e-07 62.4 221 24.9
Glyma.08G354500 Glycine max HOM05D000836 ORTHO05D000709 1.9e-07 62.0 232 24.1
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 3.3e-07 61.2 255 26.7
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 3.3e-07 61.2 255 26.7
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 3.3e-07 61.2 202 23.3
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 4.3e-07 60.8 261 23.4
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 4.3e-07 60.8 370 21.9
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 4.3e-07 60.8 88 40.9
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 4.3e-07 60.8 233 23.6
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 5.7e-07 60.5 88 40.9
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 7.4e-07 60.1 208 29.3
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 9.7e-07 59.7 40 72.5
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 9.7e-07 59.7 292 21.9
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 9.7e-07 59.7 254 26.8
Lj5g0014115 Lotus japonicus HOM05D002332 ORTHO05D002509 1.3e-06 59.3 269 22.3
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 1.6e-06 58.9 234 25.2
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.6e-06 58.9 178 25.3
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.6e-06 58.9 178 25.3
Glyma.18G171100 Glycine max HOM05D000836 ORTHO05D000709 1.6e-06 58.9 232 23.7
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 1.6e-06 58.9 169 23.1
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.6e-06 58.9 221 22.6
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 2.1e-06 58.5 221 23.5
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 2.1e-06 58.5 178 24.7
FAN24G1350 Fragaria x ananassa HOM05D000836 ORTHO05D000709 2.1e-06 58.5 223 23.8
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.1e-06 58.5 233 24.5
Lj1g0004747 Lotus japonicus HOM05D002332 ORTHO05D002509 2.1e-06 58.5 268 23.1
Aa31LG10G9730 Aethionema arabicum HOM05D002332 ORTHO05D002509 2.8e-06 58.2 211 23.7
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 2.8e-06 58.2 221 22.2
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 2.8e-06 58.2 221 22.2
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 2.8e-06 58.2 221 22.6
Glyma.05G071000 Glycine max HOM05D000836 ORTHO05D000709 3.7e-06 57.8 253 23.3
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 3.7e-06 57.8 221 22.6
Thecc.03G126600 Theobroma cacao HOM05D002332 ORTHO05D002509 4.8e-06 57.4 245 23.3
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 6.3e-06 57.0 221 22.2
Migut.A00286 Erythranthe guttata HOM05D000836 ORTHO05D000709 8.2e-06 56.6 254 22.8
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 8.2e-06 56.6 205 23.4
Nitab4.5_0023790g0010 Nicotiana tabacum HOM05D004669 ORTHO05D005767 8.2e-06 56.6 205 23.4


User provided reference genes

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