Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 6.0e-100 367.5 180 100.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 3.3e-98 361.7 180 97.8
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 6.2e-97 357.5 180 95.6
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.5e-95 352.8 180 95.0
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.0e-95 352.4 180 93.9
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.1e-93 346.7 180 93.3
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.4e-93 346.3 180 91.1
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.4e-93 346.3 180 91.7
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 2.4e-93 345.5 180 90.6
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 2.4e-93 345.5 179 91.6
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 5.4e-93 344.4 180 90.6
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 5.4e-93 344.4 180 91.1
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.1e-92 342.4 180 89.4
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 7.9e-92 340.5 180 90.0
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.3e-91 339.7 180 90.6
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 2.3e-91 339.0 180 89.4
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 6.7e-91 337.4 180 89.4
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.1e-90 336.7 180 89.4
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.1e-90 336.7 180 86.7
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.1e-90 336.7 180 86.7
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.1e-90 336.7 180 88.3
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.9e-90 335.9 180 86.1
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 3.3e-90 335.1 180 89.4
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 4.3e-90 334.7 180 87.8
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 5.6e-90 334.3 180 88.9
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 5.6e-90 334.3 180 86.1
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 86.1
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 87.2
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 85.6
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 87.8
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 87.8
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 2.8e-89 332.0 180 85.0
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.1
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.7
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 86.7
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 86.1
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 87.2
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 86.1
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 86.1
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 86.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.4e-88 328.9 180 85.6
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.4e-88 328.9 180 85.6
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 84.4
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 84.4
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 85.6
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 4.0e-88 328.2 180 85.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 86.1
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 83.9
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 85.0
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 82.8
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 85.0
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 86.7
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 85.0
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 83.9
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 81.7
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 83.3
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 82.2
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 82.2
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.9e-86 322.0 181 83.4
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 83.3
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.9e-85 319.3 181 83.4
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 85.0
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 3.2e-85 318.5 181 84.0
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.8
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 82.2
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 9.3e-85 317.0 199 76.4
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.1
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.1
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 1.3e-83 313.2 180 80.0
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 7.4e-82 307.4 203 73.4
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 8.1e-81 303.9 206 72.3
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.4e-80 303.1 165 84.8
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 1.4e-80 303.1 180 80.6
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.8e-80 302.8 187 75.9
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 7.6e-79 297.4 160 88.1
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 4.9e-78 294.7 159 86.2
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 5.5e-77 291.2 174 80.5
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.7e-76 288.9 180 76.7
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 3.5e-76 288.5 159 86.2
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.3e-75 286.6 161 82.0
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.8e-75 286.2 175 78.3
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 5.1e-75 284.6 160 82.5
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.1e-74 283.5 172 82.0
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.1e-74 283.5 177 73.4
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 3.3e-74 282.0 160 80.6
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 3.3e-74 282.0 177 71.8
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.3e-73 280.0 180 74.4
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.8e-73 278.9 167 79.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.1e-72 276.9 156 80.8
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.4e-72 276.6 139 92.8
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 6.9e-72 274.2 162 77.8
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 5.9e-71 271.2 218 66.5
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 8.5e-70 267.3 164 75.6
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 3.6e-68 261.9 175 67.4
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 5.1e-67 258.1 153 79.1
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 4.3e-66 255.0 175 66.3
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 5.7e-66 254.6 139 82.0
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.2e-60 236.9 171 62.6
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.4e-59 233.4 181 65.7
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.4e-55 218.8 114 84.2
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 2.3e-51 206.1 174 54.0
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 3.0e-51 205.7 121 76.9
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.8e-48 196.4 117 73.5
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 7.7e-47 191.0 146 64.4
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 9.4e-45 184.1 185 55.1
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 9.4e-45 184.1 185 55.1
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 2.7e-39 166.0 93 79.6
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 7.7e-39 164.5 115 71.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 2.9e-38 162.5 96 77.1
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 4.2e-37 158.7 174 44.3
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.1e-36 156.4 174 42.5
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 3.6e-36 155.6 91 79.1
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 5.7e-34 148.3 116 59.5
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 4.8e-33 145.2 177 45.8
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.5e-29 133.7 80 77.5
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 8.3e-25 117.9 99 60.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.0e-23 113.2 71 66.2
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.9e-22 109.4 65 76.9
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 8.6e-22 107.8 100 60.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 3.0e-19 99.4 56 91.1
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.2e-18 97.4 56 80.4
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 9.8e-18 94.4 50 90.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.7e-14 83.6 46 82.6
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.1e-08 64.3 45 73.3
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 7.8e-07 58.2 57 50.9


User provided reference genes

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