Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 6.0e-67 257.3 123 100.0
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.5e-41 172.9 127 74.0
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 6.2e-40 167.5 119 73.9
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.1e-28 130.2 132 56.8
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 7.1e-28 127.5 128 59.4
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.2e-27 126.7 128 59.4
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.2e-27 126.7 128 58.6
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.1e-25 120.2 121 57.0
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.3e-25 118.6 121 57.0
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 3.3e-25 118.6 121 57.0
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.4e-23 113.2 121 57.0
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.4e-23 112.5 132 53.8
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.3e-23 111.3 132 53.0
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 5.9e-22 107.8 132 51.5
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.3e-21 106.7 126 51.6
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 2.2e-21 105.9 126 51.6
Gohir.A08G156500 Gossypium hirsutum HOM05D006292 ORTHO05D006110 8.5e-21 104.0 109 52.3
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 2.5e-20 102.4 126 50.8
Gohir.D08G177000 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.2e-19 100.1 109 50.5
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.2e-19 100.1 121 49.6
Gorai.004G184900 Gossypium raimondii HOM05D006292 ORTHO05D006110 2.1e-19 99.4 109 50.5
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 7.9e-19 97.4 129 46.5
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 3.9e-18 95.1 130 45.4
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 5.1e-18 94.7 129 45.7
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 7.4e-17 90.9 121 45.5
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.2e-16 89.4 125 42.4
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.7e-16 88.6 121 44.6
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 5.3e-15 84.7 123 42.3
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 5.3e-15 84.7 124 46.8
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 9.1e-15 84.0 116 45.7
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 9.1e-15 84.0 114 44.7
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 2.0e-14 82.8 130 41.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 2.6e-14 82.4 118 46.6
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 4.5e-14 81.6 113 44.2
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.0e-13 80.5 116 45.7
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 3.8e-13 78.6 116 44.8
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 3.8e-13 78.6 121 42.1
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 6.5e-13 77.8 111 44.1
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 6.5e-13 77.8 114 41.2
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 8.5e-13 77.4 119 42.9
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 1.9e-12 76.3 116 45.7
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 4.2e-12 75.1 115 43.5
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 4.2e-12 75.1 111 45.0
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 5.5e-12 74.7 124 38.7
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 7.2e-12 74.3 119 40.3
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 7.2e-12 74.3 119 40.3
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 9.4e-12 73.9 126 38.9
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 9.4e-12 73.9 116 45.7
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 9.4e-12 73.9 114 38.6
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 1.6e-11 73.2 123 40.7
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 2.1e-11 72.8 86 45.3
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.1e-11 72.8 124 39.5
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 2.1e-11 72.8 119 40.3
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 3.6e-11 72.0 123 39.0
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 3.6e-11 72.0 114 42.1
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 7.9e-11 70.9 120 39.2
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 7.9e-11 70.9 111 40.5
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 1.0e-10 70.5 111 40.5
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.0e-10 70.5 117 40.2
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.0e-10 70.5 124 41.1
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.0e-10 70.5 113 41.6
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 1.0e-10 70.5 113 40.7
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 1.8e-10 69.7 121 38.8
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.8e-10 69.7 117 38.5
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 2.3e-10 69.3 110 41.8
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.3e-10 69.3 89 48.3
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.3e-10 69.3 89 48.3
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.3e-10 69.3 89 48.3
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 3.0e-10 68.9 114 40.4
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 3.9e-10 68.6 123 39.8
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 3.9e-10 68.6 125 40.0
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 3.9e-10 68.6 125 40.0
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 3.9e-10 68.6 125 40.0
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 3.9e-10 68.6 115 42.6
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 3.9e-10 68.6 118 38.1
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 3.9e-10 68.6 117 41.9
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 3.9e-10 68.6 111 43.2
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 6.7e-10 67.8 136 37.5
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 8.8e-10 67.4 136 39.7
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 8.8e-10 67.4 114 41.2
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.1e-09 67.0 117 39.3
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.1e-09 67.0 84 45.2
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 1.5e-09 66.6 113 35.4
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 1.5e-09 66.6 125 35.2
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.5e-09 66.6 125 39.2
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 2.0e-09 66.2 137 37.2
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 2.0e-09 66.2 123 39.0
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.0e-09 66.2 115 39.1
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 2.0e-09 66.2 113 35.4
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 2.0e-09 66.2 114 39.5
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 2.6e-09 65.9 124 37.1
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 2.6e-09 65.9 124 37.1
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 2.6e-09 65.9 113 34.5
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 3.3e-09 65.5 122 38.5
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 3.3e-09 65.5 126 37.3
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 4.4e-09 65.1 107 37.4
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 5.7e-09 64.7 113 35.4
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 5.7e-09 64.7 115 36.5
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 5.7e-09 64.7 113 42.5
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 5.7e-09 64.7 113 42.5
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 7.4e-09 64.3 86 48.8
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 9.7e-09 63.9 113 38.9
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 1.3e-08 63.5 134 37.3
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.3e-08 63.5 143 36.4
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 2.2e-08 62.8 115 35.7
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 2.2e-08 62.8 117 39.3
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 2.2e-08 62.8 132 34.1
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 2.8e-08 62.4 113 39.8
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 2.8e-08 62.4 129 36.4
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 4.8e-08 61.6 117 39.3
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 4.8e-08 61.6 117 39.3
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 4.8e-08 61.6 115 38.3
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 4.8e-08 61.6 117 38.5
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.4e-07 60.1 122 36.1
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 1.4e-07 60.1 117 37.6
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 3.1e-07 58.9 126 37.3
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 3.1e-07 58.9 118 36.4
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 5.3e-07 58.2 111 39.6
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 9.1e-07 57.4 113 35.4
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 2.0e-06 56.2 117 34.2
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 2.0e-06 56.2 117 34.2
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 2.6e-06 55.8 117 34.2
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 2.6e-06 55.8 117 34.2
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 2.6e-06 55.8 117 34.2
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 2.6e-06 55.8 135 31.9
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 4.5e-06 55.1 141 30.5
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 4.5e-06 55.1 112 35.7


User provided reference genes

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