Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib205G0087 Durio zibethinus HOM05D006971 ORTHO05D009076 1.4e-212 742.7 375 100.0
Thecc.03G086400 Theobroma cacao HOM05D006971 ORTHO05D009076 7.7e-182 640.6 375 86.1
COL.COLO4_28316 Corchorus olitorius HOM05D006971 ORTHO05D009076 1.1e-177 626.7 375 83.2
Gohir.A08G094100 Gossypium hirsutum HOM05D006971 ORTHO05D009076 9.1e-167 590.5 391 78.3
Gorai.004G112200 Gossypium raimondii HOM05D006971 ORTHO05D009076 9.4e-164 580.5 408 74.8
Ciclev10020174m.g Citrus clementina HOM05D006971 ORTHO05D009076 1.5e-148 530.0 374 73.3
Cpa.g.sc111.5 Carica papaya HOM05D006971 ORTHO05D009076 1.5e-145 520.0 381 70.3
Manes.06G092900 Manihot esculenta HOM05D006971 ORTHO05D009076 9.8e-145 517.3 376 70.2
TWI15G1038 Tripterygium wilfordii HOM05D006971 ORTHO05D009076 4.8e-144 515.0 372 71.5
Dinv38707 Davidia involucrata HOM05D006971 ORTHO05D009076 2.4e-143 512.7 376 71.0
CiPaw.11G044200 Carya illinoinensis HOM05D006971 ORTHO05D009076 2.0e-142 509.6 376 69.9
QL10p016808 Quercus lobata HOM05D006971 ORTHO05D009076 3.5e-142 508.8 375 69.3
CANSAT80G1552 Cannabis sativa HOM05D006971 ORTHO05D009076 3.8e-141 505.4 380 69.2
CSS0007636 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 2.5e-140 502.7 370 69.7
CSS0034788 Camellia sinensis var. sinensis HOM05D006971 ORTHO05D009076 2.5e-140 502.7 370 69.7
Ca_21824_v3 Cicer arietinum L. HOM05D006971 ORTHO05D009076 2.5e-140 502.7 351 71.8
VMungo1215G2247 Vigna mungo HOM05D006971 ORTHO05D009076 3.6e-139 498.8 375 70.1
Glyma.05G027100 Glycine max HOM05D006971 ORTHO05D009076 4.7e-139 498.4 353 72.8
RcHm_v2.0_Chr7g0181351 Rosa chinensis HOM05D006971 ORTHO05D009076 6.1e-139 498.0 374 68.2
Actinidia04895 Actinidia chinensis HOM05D006971 ORTHO05D009076 8.0e-139 497.7 376 68.6
Medtr0493s0030 Medicago truncatula HOM05D006971 ORTHO05D009076 8.0e-139 497.7 353 71.4
Phvul.003G190500 Phaseolus vulgaris HOM05D006971 ORTHO05D009076 1.0e-138 497.3 376 70.2
Lj4g0026607 Lotus japonicus HOM05D006971 ORTHO05D009076 2.3e-138 496.1 375 69.1
Glyma.17G099600 Glycine max HOM05D006971 ORTHO05D009076 3.0e-138 495.7 353 72.2
Lalb_Chr07g0178011 Lupinus albus HOM05D006971 ORTHO05D009076 3.0e-138 495.7 368 68.8
Eucgr.B00501 Eucalyptus grandis HOM05D006971 ORTHO05D009076 8.9e-138 494.2 343 73.8
Psat4g051280 Pisum sativum HOM05D006971 ORTHO05D009076 1.2e-137 493.8 353 70.3
CsaV3_1G005470 Cucumis sativus L. HOM05D006971 ORTHO05D009076 4.4e-137 491.9 375 67.2
MELO3C001980.2 Cucumis melo HOM05D006971 ORTHO05D009076 9.8e-137 490.7 375 66.9
Rhsim08G0155400 Rhododendron simsii HOM05D006971 ORTHO05D009076 9.8e-137 490.7 381 68.5
PGR083G0834 Punica granatum HOM05D006971 ORTHO05D009076 1.3e-136 490.3 373 66.8
MD14G1199800 Malus domestica HOM05D006971 ORTHO05D009076 2.8e-136 489.2 364 67.3
TPR.G9261 Trifolium pratense HOM05D006971 ORTHO05D009076 2.8e-136 489.2 353 69.7
Prupe.5G193100 Prunus persica HOM05D006971 ORTHO05D009076 1.8e-135 486.5 358 68.7
THA.LOC104808268 Tarenaya hassleriana HOM05D006971 ORTHO05D009076 1.8e-135 486.5 373 68.1
Nitab4.5_0004704g0010 Nicotiana tabacum HOM05D006971 ORTHO05D009076 3.1e-135 485.7 367 67.6
AT1G74640 Arabidopsis thaliana HOM05D006971 ORTHO05D009076 1.6e-134 483.4 374 67.4
Nitab4.5_0000842g0110 Nicotiana tabacum HOM05D006971 ORTHO05D009076 2.0e-134 483.0 370 67.0
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 3.5e-134 482.3 374 66.8
Carub.0002s2143 Capsella rubella HOM05D006971 ORTHO05D009076 5.9e-134 481.5 374 66.6
Sed0024719 Sechium edule HOM05D006971 ORTHO05D009076 1.0e-133 480.7 371 66.8
Sp5g29760 Schrenkiella parvula HOM05D006971 ORTHO05D009076 2.9e-133 479.2 374 66.8
BcaB05g24862 Brassica carinata HOM05D006971 ORTHO05D009076 1.9e-132 476.5 375 65.9
BraA02t06985Z Brassica rapa HOM05D006971 ORTHO05D009076 2.5e-132 476.1 374 65.8
Nn4g23158 Nelumbo nucifera HOM05D006971 ORTHO05D009076 2.5e-132 476.1 375 65.6
BcaC03g15516 Brassica carinata HOM05D006971 ORTHO05D009076 9.5e-132 474.2 372 65.9
C02p31990 Brassica napus HOM05D006971 ORTHO05D009076 9.5e-132 474.2 372 65.9
arahy.Tifrunner.gnm1.ann1.QE88UD Arachis hypogaea HOM05D006971 ORTHO05D009076 2.1e-131 473.0 374 66.3
Aqoxy3G04167 Aquilegia oxysepala HOM05D006971 ORTHO05D009076 3.6e-131 472.2 346 67.3
A02p19460 Brassica napus HOM05D006971 ORTHO05D009076 3.6e-131 472.2 372 65.6
MSTRG.4425 Avicennia marina HOM05D006971 ORTHO05D009076 6.1e-131 471.5 384 64.6
Lj9A463T31 Lonicera japonica HOM05D006971 ORTHO05D009076 6.1e-131 471.5 313 74.1
CAN.G837.13 Capsicum annuum HOM05D006971 ORTHO05D009076 1.0e-130 470.7 367 65.7
FvH4_5g14981 Fragaria vesca HOM05D006971 ORTHO05D009076 1.8e-130 469.9 315 74.6
FAN18G2929 Fragaria x ananassa HOM05D006971 ORTHO05D009076 1.8e-130 469.9 315 74.6
PSO017G5818 Papaver somniferum HOM05D006971 ORTHO05D009076 1.8e-130 469.9 375 64.8
arahy.Tifrunner.gnm1.ann1.NVD91E Arachis hypogaea HOM05D006971 ORTHO05D009076 2.3e-130 469.5 374 66.0
Aa31LG4G4870 Aethionema arabicum HOM05D006971 ORTHO05D009076 6.8e-130 468.0 375 63.7
Sopen03g035080 Solanum pennellii HOM05D006971 ORTHO05D009076 6.8e-130 468.0 377 65.3
Potri.017G115100 Populus trichocarpa HOM05D006971 ORTHO05D009076 8.9e-130 467.6 376 64.1
Solyc03g116110.3 Solanum lycopersicum HOM05D006971 ORTHO05D009076 1.5e-129 466.8 377 65.3
HanXRQChr05g0158151 Helianthus annuus HOM05D006971 ORTHO05D009076 2.0e-129 466.5 379 64.9
GSVIVG01008006001 Vitis vinifera HOM05D006971 ORTHO05D009076 3.4e-129 465.7 379 66.5
PGSC0003DMG400019536 Solanum tuberosum HOM05D006971 ORTHO05D009076 7.5e-129 464.5 376 64.6
FAN04G0596 Fragaria x ananassa HOM05D006971 ORTHO05D009076 9.8e-129 464.2 419 60.1
Oeu006511.1 Olea europaea HOM05D006971 ORTHO05D009076 1.3e-128 463.8 367 65.1
ECA246G1831 Erigeron canadensis HOM05D006971 ORTHO05D009076 2.2e-128 463.0 372 65.6
DCAR_016549 Daucus carota HOM05D006971 ORTHO05D009076 4.9e-128 461.8 336 70.8
CARHR067910 Cardamine hirsuta HOM05D006971 ORTHO05D009076 5.4e-127 458.4 313 71.9
Sabra17G0095300 Salix brachista HOM05D006971 ORTHO05D009076 6.0e-126 454.9 374 63.4
SalBow7G4263 Salvia bowleyana HOM05D006971 ORTHO05D009076 2.3e-125 453.0 382 62.0
Cc04_g16660 Coffea canephora HOM05D006971 ORTHO05D009076 6.6e-125 451.4 344 68.0
Migut.D01821 Erythranthe guttata HOM05D006971 ORTHO05D009076 5.6e-124 448.4 373 63.0
Ah.02g113480 Amaranthus hybridus HOM05D006971 ORTHO05D009076 2.3e-122 443.0 351 65.8
MBI02_g41659_MAGBIO Magnolia biondii HOM05D006971 ORTHO05D009076 2.3e-122 443.0 371 62.0
Zm00001eb099580 Zea mays HOM05D006971 ORTHO05D009076 3.1e-122 442.6 328 67.1
FAN13G3185 Fragaria x ananassa HOM05D006971 ORTHO05D009076 6.8e-122 441.4 299 72.9
SGA_v2.0_scaffold114G31906 Striga asiatica HOM05D006971 ORTHO05D009076 6.8e-122 441.4 382 61.5
Lsat_1_v5_gn_5_20140 Lactuca sativa HOM05D006971 ORTHO05D009076 5.8e-121 438.3 330 67.6
Peaxi162Scf00274g00071 Petunia axillaris HOM05D006971 ORTHO05D009076 2.2e-120 436.4 297 72.7
AUR62008412 Chenopodium quinoa HOM05D006971 ORTHO05D009076 1.4e-119 433.7 374 61.2
TAR629G1638 Trochodendron aralioides HOM05D006971 ORTHO05D009076 3.2e-119 432.6 282 74.5
FAN08G1158 Fragaria x ananassa HOM05D006971 ORTHO05D009076 1.6e-118 430.3 280 76.1
unitig_60.g25418 Utricularia gibba HOM05D006971 ORTHO05D009076 1.6e-115 420.2 341 60.1
CDE07G1445 Ceratophyllum demersum HOM05D006971 ORTHO05D009076 3.6e-115 419.1 342 60.8
ATR0564G273 Amborella trichopoda HOM05D006971 ORTHO05D009076 1.8e-114 416.8 375 56.5
AUR62021684 Chenopodium quinoa HOM05D006971 ORTHO05D009076 8.3e-112 407.9 353 61.2
PSO478G0283 Papaver somniferum HOM05D006971 ORTHO05D009076 1.1e-111 407.5 282 70.6
Gohir.D08G105301 Gossypium hirsutum HOM05D006971 ORTHO05D009076 4.7e-107 392.1 232 85.3
EL10Ac5g11009 Beta vulgaris HOM05D006971 ORTHO05D009076 4.9e-104 382.1 468 48.1
Hund02652 Selenicereus undatus HOM05D006971 ORTHO05D009076 1.3e-99 367.5 365 55.3
Cfa018946 Carpinus fangiana HOM05D006971 ORTHO05D009076 6.4e-96 355.1 249 71.5
HPP92_002355 Vanilla planifolia HOM05D006971 ORTHO05D009076 3.6e-91 339.3 267 63.3
Mapoly0071s0120 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.9e-87 327.0 368 48.6
Mapoly0229s0006 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.9e-87 327.0 368 48.6
vmacro17544 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 1.6e-86 323.9 206 78.6
Pp3c23_920 Physcomitrium patens HOM05D006971 ORTHO05D009076 1.3e-85 320.9 334 48.5
SMO111G0229 Selaginella moellendorffii HOM05D006971 ORTHO05D009076 4.0e-82 309.3 275 55.6
Os09g0413700 Oryza sativa ssp. japonica HOM05D006971 ORTHO05D009076 6.9e-82 308.5 252 61.1
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 3.9e-77 292.7 250 58.8
HPP92_027581 Vanilla planifolia HOM05D006971 ORTHO05D009076 8.8e-53 211.8 209 51.2
ClCG04G012280 Citrullus lanatus HOM05D006971 ORTHO05D009076 9.7e-44 181.8 165 55.2
vmacro17545 Vaccinium macrocarpon HOM05D006971 ORTHO05D009076 1.1e-42 178.3 165 55.8
Dinv19957 Davidia involucrata HOM05D006971 ORTHO05D009076 7.2e-39 165.6 125 68.0
AagrBONN_evm.TU.Sc2ySwM_368.527 Anthoceros agrestis HOM05D006971 ORTHO05D009076 6.8e-37 159.1 192 40.6
BcaB03g13848 Brassica carinata HOM05D006971 ORTHO05D009076 4.8e-35 152.9 151 55.0
Thhalv10019619m.g Eutrema salsugineum HOM05D006971 ORTHO05D009076 5.5e-31 139.4 152 53.3
Actinidia37630 Actinidia chinensis HOM05D000001 ORTHO05D008780 1.1e-26 125.2 85 74.1
SEGI_28088 Sequoiadendron giganteum HOM05D006971 ORTHO05D009076 5.0e-24 116.3 98 51.0
HPP92_027582 Vanilla planifolia HOM05D006971 ORTHO05D009076 2.0e-17 94.4 133 43.6
MD06G1192800 Malus domestica HOM05D006971 ORTHO05D009076 5.0e-16 89.7 86 58.1
Nitab4.5_0000178g0250 Nicotiana tabacum HOM05D000916 ORTHO05D008340 7.3e-07 59.3 342 24.0
A07p29310 Brassica napus HOM05D006971 ORTHO05D041645 2.8e-06 57.4 48 60.4
BraA07t30570Z Brassica rapa HOM05D006971 ORTHO05D041645 2.8e-06 57.4 48 60.4
Peaxi162Scf00366g00535 Petunia axillaris HOM05D000916 ORTHO05D008340 6.2e-06 56.2 317 21.5


User provided reference genes

Program Settings