Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 6.0e-242 840.5 445 100.0
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 4.7e-69 266.2 454 42.1
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 1.5e-64 251.1 454 41.0
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.6e-56 223.8 446 39.7
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.1e-46 191.8 465 35.1
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 1.6e-45 188.0 237 53.2
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.7e-45 187.2 235 53.6
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.0e-28 132.1 170 53.5
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 2.3e-28 131.0 111 60.4
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.5e-19 101.7 460 27.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 2.2e-18 97.8 519 28.9
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 3.7e-18 97.1 501 25.5
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.1e-17 95.5 494 26.7
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.2e-16 92.0 529 23.8
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 6.0e-16 89.7 522 25.9
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.0e-15 89.0 462 27.7
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.7e-15 88.2 464 28.4
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 3.0e-15 87.4 525 23.2
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 1.1e-14 85.5 486 24.1
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 5.6e-14 83.2 493 22.3
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 9.5e-14 82.4 472 25.8
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.6e-13 81.6 486 26.1
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 1.6e-13 81.6 317 29.7
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 3.6e-13 80.5 99 47.5
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 8.1e-13 79.3 500 26.0
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 1.4e-12 78.6 508 26.4
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.4e-12 78.6 466 23.0
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 1.4e-12 78.6 490 25.3
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 3.1e-12 77.4 462 25.8
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 8.9e-12 75.9 480 24.2
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 8.9e-12 75.9 481 24.5
FvH4_3g07930 Fragaria vesca HOM05D016724 ORTHO05D017903 1.2e-11 75.5 461 26.0
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 1.5e-11 75.1 472 22.7
FAN11G3468 Fragaria x ananassa HOM05D016724 ORTHO05D017903 2.0e-11 74.7 462 26.2
FAN16G0791 Fragaria x ananassa HOM05D016724 ORTHO05D017903 2.0e-11 74.7 462 26.2
FAN21G3782 Fragaria x ananassa HOM05D016724 ORTHO05D017903 5.8e-11 73.2 469 25.6
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 9.9e-11 72.4 456 25.0
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 9.9e-11 72.4 465 23.9
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.3e-10 72.0 613 25.0
Manes.17G054601 Manihot esculenta HOM05D023908 ORTHO05D002944 2.9e-10 70.9 101 42.6
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 3.7e-10 70.5 488 25.4
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 4.9e-10 70.1 462 24.7
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 6.4e-10 69.7 464 22.2
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 6.4e-10 69.7 79 44.3
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 1.4e-09 68.6 361 27.1
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 1.4e-09 68.6 453 25.8
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 1.9e-09 68.2 453 24.9
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.9e-09 68.2 478 21.5
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 1.9e-09 68.2 113 36.3
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 1.9e-09 68.2 476 24.6
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 2.4e-09 67.8 513 23.6
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 2.4e-09 67.8 141 34.8
Cc02_g14720 Coffea canephora HOM05D014572 ORTHO05D016880 3.2e-09 67.4 69 47.8
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 4.1e-09 67.0 473 24.7
QL05p046502 Quercus lobata HOM05D016724 ORTHO05D017903 4.1e-09 67.0 359 27.0
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 4.1e-09 67.0 480 25.2
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 5.4e-09 66.6 490 22.7
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 5.4e-09 66.6 468 22.9
RcHm_v2.0_Chr5g0010561 Rosa chinensis HOM05D016724 ORTHO05D017903 5.4e-09 66.6 462 27.1
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 5.4e-09 66.6 121 38.0
TWI38G0720 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 9.2e-09 65.9 459 24.2
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.2e-08 65.5 56 50.0
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 1.2e-08 65.5 167 30.5
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.6e-08 65.1 334 28.4
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 2.1e-08 64.7 523 22.8
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 2.1e-08 64.7 459 24.0
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 2.7e-08 64.3 523 22.9
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 2.7e-08 64.3 209 28.7
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 2.7e-08 64.3 71 39.4
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 2.7e-08 64.3 463 21.6
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 3.5e-08 63.9 459 22.7
FAN25G1620 Fragaria x ananassa HOM05D016724 ORTHO05D017903 3.5e-08 63.9 118 38.1
MBI06_g25989_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 3.5e-08 63.9 483 26.3
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 4.6e-08 63.5 474 23.4
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 6.0e-08 63.2 66 43.9
CSS0028772 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 6.0e-08 63.2 124 38.7
CSS0022523 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 7.8e-08 62.8 160 33.8
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 7.8e-08 62.8 72 40.3
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 1.0e-07 62.4 71 38.0
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 1.0e-07 62.4 101 38.6
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 1.0e-07 62.4 508 26.6
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 1.3e-07 62.0 71 38.0
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.3e-07 62.0 486 22.6
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.3e-07 62.0 243 29.6
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.3e-07 62.0 244 29.9
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.3e-07 62.0 232 29.3
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.3e-07 62.0 99 35.4
CSS0018366 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.7e-07 61.6 85 41.2
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 1.7e-07 61.6 153 30.7
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.7e-07 61.6 511 23.1
TWI63G0650 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 1.7e-07 61.6 95 38.9
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 1.7e-07 61.6 524 23.1
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 2.3e-07 61.2 56 46.4
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 2.3e-07 61.2 461 22.3
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 2.3e-07 61.2 467 23.8
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 3.0e-07 60.8 56 46.4
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 3.0e-07 60.8 89 41.6
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.0e-07 60.8 56 53.6
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 3.0e-07 60.8 480 20.8
CAN.G370.64 Capsicum annuum HOM05D014572 ORTHO05D016880 3.9e-07 60.5 138 37.0
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 3.9e-07 60.5 55 45.5
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 3.9e-07 60.5 527 24.7
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 3.9e-07 60.5 94 35.1
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 5.1e-07 60.1 454 24.2
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 5.1e-07 60.1 56 53.6
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 5.1e-07 60.1 56 53.6
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 5.1e-07 60.1 471 22.3
MBI07_g21399_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 6.6e-07 59.7 98 38.8
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 6.6e-07 59.7 475 22.1
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 6.6e-07 59.7 62 43.5
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea HOM05D004563 ORTHO05D002944 8.6e-07 59.3 470 23.0
BcaB06g28496 Brassica carinata HOM05D004563 ORTHO05D002944 8.6e-07 59.3 64 42.2
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 8.6e-07 59.3 114 34.2
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 1.1e-06 58.9 71 36.6
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 1.5e-06 58.5 56 44.6
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 1.5e-06 58.5 61 47.5
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 1.5e-06 58.5 464 23.3
Nitab4.5_0003322g0040 Nicotiana tabacum HOM05D014572 ORTHO05D016880 1.5e-06 58.5 102 38.2
TWI38G0108 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 1.5e-06 58.5 147 30.6
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.9e-06 58.2 92 35.9
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.9e-06 58.2 467 24.4
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.9e-06 58.2 103 36.9
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.9e-06 58.2 472 23.3
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 2.5e-06 57.8 105 31.4
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 2.5e-06 57.8 464 23.1
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 2.5e-06 57.8 459 24.2
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 3.3e-06 57.4 71 36.6
BolC3t14433H Brassica oleracea HOM05D004563 ORTHO05D002944 3.3e-06 57.4 71 36.6
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 3.3e-06 57.4 71 36.6
Ca_18892_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 3.3e-06 57.4 166 30.1
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 3.3e-06 57.4 177 28.8
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 3.3e-06 57.4 460 24.1
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 3.3e-06 57.4 57 43.9
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 3.3e-06 57.4 230 27.8
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 4.3e-06 57.0 473 24.3
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 4.3e-06 57.0 71 36.6
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 4.3e-06 57.0 71 36.6
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 4.3e-06 57.0 95 32.6
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 4.3e-06 57.0 461 23.6
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 4.3e-06 57.0 119 33.6
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 5.6e-06 56.6 95 32.6
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 5.6e-06 56.6 464 23.1
Oeu013689.1 Olea europaea HOM05D004563 ORTHO05D002944 7.3e-06 56.2 115 36.5
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 7.3e-06 56.2 285 26.3
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 7.3e-06 56.2 75 40.0
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 9.6e-06 55.8 463 23.3
Lalb_Chr19g0134931 Lupinus albus HOM05D004563 ORTHO05D002944 9.6e-06 55.8 59 47.5


User provided reference genes

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