Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 6.9e-60 233.8 120 100.0
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.9e-41 172.6 110 76.4
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.9e-41 172.6 110 79.1
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.2e-41 171.4 110 79.1
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.5e-38 162.9 110 75.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.3e-38 161.8 110 76.4
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-36 156.4 112 74.1
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.4e-36 155.6 112 74.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-35 152.5 112 73.2
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.1e-32 141.0 97 73.2
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.0e-31 140.2 110 66.4
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.3e-31 139.0 97 72.2
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.3e-31 139.0 97 72.2
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.1e-28 128.6 110 64.5
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.6e-27 126.3 108 63.0
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.6e-27 126.3 111 64.9
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.6e-27 126.3 109 57.8
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.6e-27 126.3 109 57.8
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 4.5e-27 124.8 105 59.0
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 5.9e-27 124.4 106 62.3
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.7e-27 124.0 101 60.4
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 7.7e-27 124.0 107 58.9
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 7.7e-27 124.0 107 63.6
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.0e-26 123.6 118 60.2
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 2.2e-26 122.5 99 66.7
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.2e-26 122.5 105 57.1
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.9e-26 122.1 111 57.7
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.9e-26 122.1 118 60.2
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 6.5e-26 120.9 107 57.0
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.5e-26 120.9 103 68.0
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.1e-25 120.2 105 62.9
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.5e-25 119.8 106 63.2
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.5e-25 119.8 106 63.2
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.2e-25 118.2 110 59.1
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 7.2e-25 117.5 109 61.5
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 7.2e-25 117.5 101 64.4
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 7.2e-25 117.5 109 61.5
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 7.2e-25 117.5 105 60.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.4e-25 117.1 119 56.3
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.6e-24 116.3 102 65.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.6e-24 116.3 107 59.8
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.1e-24 115.9 111 57.7
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 8.0e-24 114.0 103 59.2
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.0e-23 113.6 111 58.6
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.4e-23 113.2 111 58.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.4e-23 113.2 107 51.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.8e-23 112.8 107 54.2
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.3e-23 112.5 105 53.3
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.0e-23 111.7 106 55.7
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.0e-23 111.7 106 52.8
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 5.2e-23 111.3 117 54.7
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 6.7e-23 110.9 96 61.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 6.7e-23 110.9 105 55.2
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.0e-22 109.4 110 52.7
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.6e-22 109.0 102 56.9
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.2e-21 105.9 106 55.7
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.2e-21 105.9 105 57.1
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.8e-21 105.5 106 46.2
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 3.7e-21 105.1 96 55.2
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.8e-21 104.8 107 47.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 6.3e-21 104.4 96 51.0
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 6.3e-21 104.4 96 51.0
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 8.3e-21 104.0 105 51.4
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.4e-20 103.2 99 53.5
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.8e-20 102.8 107 53.3
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.4e-20 102.4 107 52.3
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.2e-19 100.1 101 50.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.6e-19 99.8 93 53.8
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.0e-19 99.4 107 50.5
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 5.9e-19 97.8 98 53.1
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.9e-19 97.8 86 58.1
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.9e-19 97.8 86 58.1
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-18 96.7 93 52.7
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.7e-18 96.3 77 61.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.7e-18 96.3 95 50.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.0e-18 94.7 93 51.6
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.2e-17 91.7 106 46.2
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.5e-17 91.3 106 49.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 5.5e-17 91.3 78 55.1
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.2e-17 90.9 90 55.6
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 9.4e-17 90.5 110 45.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.6e-16 89.7 106 43.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.6e-16 89.7 92 53.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.7e-16 89.0 95 49.5
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 6.1e-16 87.8 79 54.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.0e-15 87.0 117 47.0
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.8e-15 86.3 95 48.4
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.8e-15 86.3 99 47.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 4.0e-15 85.1 109 42.2
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 4.0e-15 85.1 96 47.9
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.5e-14 83.2 105 47.6
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.0e-14 82.8 110 41.8
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 2.0e-14 82.8 118 45.8
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 2.6e-14 82.4 109 42.2
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.6e-14 82.4 92 45.7
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.4e-14 81.6 76 55.3
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.4e-14 81.6 119 46.2
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 5.7e-14 81.3 66 63.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 7.5e-14 80.9 107 50.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 7.5e-14 80.9 113 41.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 9.8e-14 80.5 117 45.3
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 9.8e-14 80.5 102 48.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.3e-13 80.1 109 45.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-13 79.3 117 42.7
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 2.2e-13 79.3 117 42.7
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 2.2e-13 79.3 106 41.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.2e-13 79.3 102 40.2
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.8e-13 79.0 118 41.5
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.8e-13 79.0 108 44.4
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.8e-13 79.0 108 44.4
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 4.8e-13 78.2 117 43.6
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 4.8e-13 78.2 117 41.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 8.3e-13 77.4 111 40.5
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 8.3e-13 77.4 67 59.7
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.4e-12 76.6 117 41.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.8e-12 76.3 83 50.6
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 4.1e-12 75.1 98 43.9
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 4.1e-12 75.1 90 48.9
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 5.4e-12 74.7 108 43.5
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 9.1e-12 73.9 105 44.8
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.2e-11 73.6 114 41.2
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.2e-11 73.6 117 40.2
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.2e-11 73.6 87 44.8
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-11 73.2 84 48.8
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 2.0e-11 72.8 118 41.5
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.0e-11 72.8 105 41.0
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 2.0e-11 72.8 66 54.5
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 2.3e-10 69.3 118 38.1
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 2.3e-10 69.3 118 38.1
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 2.9e-10 68.9 83 43.4
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 5.0e-10 68.2 108 38.9
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 6.6e-10 67.8 116 37.1
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 3.3e-09 65.5 121 38.8
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 3.3e-09 65.5 121 38.8
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 3.3e-09 65.5 121 38.8
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 4.2e-09 65.1 117 36.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.2e-08 63.5 119 36.1
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 1.2e-08 63.5 121 38.0
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.6e-08 63.2 119 37.0
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-08 63.2 117 36.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.8e-08 62.4 89 46.1
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 2.8e-08 62.4 90 37.8
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 3.6e-08 62.0 126 37.3
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.6e-08 62.0 120 36.7
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.6e-08 62.0 124 34.7
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.7e-08 61.6 125 34.4
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.7e-08 61.6 125 34.4
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 6.1e-08 61.2 125 33.6
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 6.1e-08 61.2 125 33.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 6.1e-08 61.2 118 37.3
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 8.0e-08 60.8 69 55.1
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.0e-07 60.5 120 35.8
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.3e-07 59.3 120 35.0
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.0e-07 58.5 103 36.9
Zm00001eb322710 Zea mays HOM05D033327 ORTHO05D037028 4.0e-07 58.5 107 40.2
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 5.2e-07 58.2 104 38.5
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 5.2e-07 58.2 68 42.6
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.8e-07 57.8 81 43.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 8.9e-07 57.4 69 43.5
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 8.9e-07 57.4 119 35.3
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.0e-06 56.2 79 41.8
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.6e-06 55.8 78 43.6
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.6e-06 55.8 78 43.6
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.6e-06 55.8 78 43.6
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 4.4e-06 55.1 79 43.0
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 4.4e-06 55.1 79 43.0
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 5.7e-06 54.7 78 44.9
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 7.5e-06 54.3 85 38.8
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 7.5e-06 54.3 121 36.4


User provided reference genes

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