Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 6.5e-72 273.9 129 100.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 6.7e-61 237.3 130 86.2
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 5.2e-53 211.1 115 87.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.7e-51 204.9 113 82.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.7e-51 204.9 113 82.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.4e-50 203.0 113 81.4
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.3e-43 179.9 116 80.2
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 8.2e-43 177.2 130 69.2
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.0e-41 172.6 129 65.1
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.9e-41 171.0 129 65.9
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 5.9e-41 171.0 129 63.6
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.5e-39 166.4 126 65.9
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.9e-39 166.0 125 64.8
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 5.5e-39 164.5 124 62.9
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.0e-37 160.2 112 64.3
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.4e-37 159.8 124 64.5
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.2e-36 156.8 129 60.5
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 1.5e-36 156.4 112 64.3
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.6e-36 155.6 129 60.5
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.4e-36 155.2 114 64.0
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.7e-35 152.9 130 60.8
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 3.7e-35 151.8 115 63.5
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.8e-35 151.4 113 63.7
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.1e-34 150.2 132 58.3
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.6e-33 146.4 121 60.3
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 2.0e-33 146.0 133 59.4
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.7e-33 145.6 132 58.3
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 7.7e-33 144.1 118 62.7
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 5.0e-32 141.4 134 53.0
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.1e-31 140.2 133 58.6
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.9e-31 139.4 113 60.2
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.9e-31 139.4 132 51.5
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 3.2e-31 138.7 113 60.2
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 5.5e-31 137.9 119 59.7
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.2e-30 136.7 130 56.2
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.1e-30 136.0 119 58.8
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.1e-30 136.0 112 58.9
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 2.8e-30 135.6 120 58.3
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.6e-30 135.2 113 58.4
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.0e-29 133.7 114 57.9
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 5.2e-29 131.3 112 55.4
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.0e-28 129.4 134 50.0
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 7.5e-28 127.5 127 50.4
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 1.7e-27 126.3 113 53.1
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 6.3e-27 124.4 121 51.2
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.4e-26 123.2 116 53.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.8e-26 122.9 118 51.7
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 9.2e-26 120.6 119 51.3
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 1.6e-25 119.8 119 51.3
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.7e-25 119.0 117 53.8
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 5.9e-25 117.9 113 54.0
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.9e-24 115.5 116 54.3
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 5.0e-24 114.8 115 52.2
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 8.6e-24 114.0 125 50.4
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.5e-23 113.2 115 49.6
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.3e-23 112.1 132 45.5
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 5.6e-23 111.3 123 50.4
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 5.6e-23 111.3 108 55.6
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 5.6e-23 111.3 124 47.6
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 6.1e-22 107.8 114 44.7
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 8.0e-22 107.5 117 49.6
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 8.0e-22 107.5 113 50.4
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.3e-21 105.9 111 45.0
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.0e-21 105.1 113 48.7
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.0e-21 105.1 113 48.7
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 4.0e-21 105.1 113 45.1
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 5.2e-21 104.8 118 49.2
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 6.8e-21 104.4 111 50.5
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 8.9e-21 104.0 110 51.8
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.0e-20 102.8 124 48.4
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 5.7e-20 101.3 106 52.8
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 7.5e-20 100.9 113 49.6
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 9.8e-20 100.5 112 50.0
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.8e-20 100.5 124 47.6
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 1.3e-19 100.1 111 49.5
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.3e-19 100.1 112 52.7
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 1.7e-19 99.8 119 50.4
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.9e-19 98.2 130 44.6
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 4.9e-19 98.2 105 47.6
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 8.3e-19 97.4 112 50.9
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.4e-18 96.7 111 49.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.4e-18 95.9 115 46.1
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 2.4e-18 95.9 105 46.7
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.2e-18 95.5 127 41.7
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.2e-18 95.5 108 48.1
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 3.2e-18 95.5 116 47.4
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 9.2e-18 94.0 106 47.2
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 9.2e-18 94.0 128 42.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.0e-17 92.8 112 43.8
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.5e-17 92.0 131 41.2
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 4.6e-17 91.7 117 47.0
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.9e-17 91.3 108 48.1
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 5.9e-17 91.3 108 48.1
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.8e-17 90.9 127 41.7
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.0e-16 90.5 141 41.8
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-16 90.1 113 42.5
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.3e-16 90.1 127 40.9
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 8.6e-16 87.4 122 44.3
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 8.6e-16 87.4 122 44.3
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 8.6e-16 87.4 122 44.3
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.5e-15 86.7 122 45.9
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.5e-15 86.7 115 39.1
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.5e-15 86.7 109 42.2
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 2.5e-15 85.9 121 41.3
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.5e-15 85.9 113 39.8
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 4.3e-15 85.1 114 43.9
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 4.3e-15 85.1 129 41.1
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 5.6e-15 84.7 115 39.1
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 7.3e-15 84.3 121 43.8
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 1.2e-14 83.6 95 50.5
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.8e-14 82.4 108 43.5
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 3.6e-14 82.0 113 44.2
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 4.7e-14 81.6 116 40.5
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.1e-13 79.0 114 39.5
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 4.0e-13 78.6 132 35.6
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 5.2e-13 78.2 114 39.5
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 5.2e-13 78.2 113 38.9
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.5e-12 76.6 131 38.9
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 1.5e-12 76.6 109 42.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.0e-12 76.3 118 41.5
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 2.0e-12 76.3 111 39.6
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 5.8e-12 74.7 107 39.3
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 9.8e-12 73.9 119 35.3
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.8e-12 73.9 106 41.5
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.7e-11 73.2 127 37.8
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 2.2e-11 72.8 127 34.6
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 2.9e-11 72.4 120 36.7
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.7e-11 72.0 107 38.3
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 4.9e-11 71.6 121 36.4
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 8.3e-11 70.9 115 40.0
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 8.3e-11 70.9 115 40.0
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 1.9e-10 69.7 106 34.0
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.4e-10 69.3 129 35.7
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.2e-10 68.9 127 34.6
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 3.2e-10 68.9 105 35.2
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.1e-10 68.6 107 43.0
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.2e-10 67.4 115 39.1
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.2e-10 67.4 122 32.8
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.7e-09 65.9 118 33.1
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 2.3e-08 62.8 109 33.0
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 3.0e-08 62.4 117 38.5
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 3.9e-08 62.0 141 35.5
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 2.5e-07 59.3 73 43.8
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 4.3e-07 58.5 96 39.6
Zm00001eb219890 Zea mays HOM05D004992 ORTHO05D006004 2.1e-06 56.2 94 36.2
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 6.2e-06 54.7 102 32.4
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 6.2e-06 54.7 57 47.4


User provided reference genes

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