Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 0.0e+00 1492.2 846 100.0
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 2.3e-287 992.3 804 74.6
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 3.8e-261 905.2 781 71.1
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 8.7e-250 867.5 796 66.8
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 1.3e-232 810.4 796 63.7
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.1e-228 797.3 755 65.8
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 7.0e-183 645.2 916 49.8
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 2.3e-109 401.0 875 37.9
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 1.1e-106 392.1 784 39.2
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 1.8e-106 391.3 816 40.0
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 2.0e-105 387.9 834 38.5
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 3.0e-101 374.0 852 36.5
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 7.4e-100 369.4 828 37.8
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 9.1e-98 362.5 968 34.6
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 1.2e-97 362.1 847 37.2
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 4.1e-90 337.0 834 39.2
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 5.3e-90 336.7 856 36.2
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 1.9e-87 328.2 826 35.2
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 9.7e-84 315.8 891 33.8
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 3.1e-82 310.8 894 33.3
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 2.0e-81 308.1 873 33.9
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 6.5e-80 303.1 815 36.9
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 7.2e-79 299.7 855 32.7
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.0e-77 295.8 894 33.2
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 7.5e-76 289.7 768 35.8
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 9.8e-76 289.3 849 32.3
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 4.8e-75 287.0 820 32.2
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 7.7e-73 279.6 817 32.3
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 8.6e-72 276.2 851 31.7
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 3.0e-69 267.7 844 31.5
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 1.2e-68 265.8 808 31.6
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 2.0e-68 265.0 454 41.9
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 2.6e-68 264.6 825 31.2
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 1.7e-67 261.9 819 33.2
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 3.1e-66 257.7 872 33.0
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 4.3e-63 247.3 843 31.9
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 5.6e-63 246.9 815 34.6
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 1.6e-62 245.4 815 32.6
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 1.5e-60 238.8 808 31.8
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 3.7e-59 234.2 906 29.1
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 6.4e-59 233.4 799 30.5
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 6.4e-59 233.4 874 31.6
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 1.2e-52 212.6 827 30.2
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 3.5e-49 201.1 850 28.4
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 1.7e-48 198.7 833 28.9
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 9.5e-47 193.0 879 29.4
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 2.1e-46 191.8 837 27.7
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 3.6e-46 191.0 781 28.4
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 6.2e-46 190.3 835 29.2
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 2.3e-45 188.3 813 28.5
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 4.0e-45 187.6 826 28.7
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 1.2e-44 186.0 924 27.8
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 2.6e-44 184.9 828 28.7
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 5.8e-44 183.7 835 29.0
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 9.9e-44 183.0 833 28.2
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 1.1e-42 179.5 839 28.2
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 2.4e-42 178.3 833 29.1
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 7.1e-42 176.8 259 48.3
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 2.7e-41 174.9 953 27.1
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 6.0e-41 173.7 901 27.9
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 1.7e-40 172.2 883 26.6
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 3.0e-40 171.4 851 27.8
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 5.1e-40 170.6 900 26.4
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 2.5e-39 168.3 865 28.0
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 5.6e-39 167.2 384 44.0
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 4.0e-37 161.0 868 28.1
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 6.8e-37 160.2 851 28.0
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 1.5e-36 159.1 907 25.9
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 1.5e-36 159.1 902 26.9
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 1.5e-36 159.1 614 27.5
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 5.8e-36 157.1 765 26.5
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 9.2e-34 149.8 826 27.6
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 2.1e-33 148.7 831 27.1
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 3.9e-32 144.4 525 29.7
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 3.9e-32 144.4 915 28.0
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 3.9e-32 144.4 895 28.3
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 1.1e-31 142.9 831 27.3
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 4.3e-31 141.0 100 70.0
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 2.1e-30 138.7 530 27.4
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 1.4e-29 136.0 844 26.7
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 6.9e-29 133.7 865 24.9
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 1.2e-25 122.9 240 40.4
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 2.1e-25 122.1 214 45.8
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 2.7e-25 121.7 163 47.2
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 6.0e-25 120.6 175 45.7
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 5.1e-24 117.5 796 25.4
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 6.6e-24 117.1 424 31.6
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 1.1e-23 116.3 225 36.9
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 7.3e-23 113.6 266 35.3
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 6.2e-22 110.5 846 25.3
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 1.4e-21 109.4 199 40.2
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 2.2e-19 102.1 74 62.2
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 2.4e-18 98.6 105 52.4
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 5.4e-18 97.4 453 27.8
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 1.2e-17 96.3 74 64.9
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 1.6e-17 95.9 98 49.0
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 6.0e-17 94.0 790 24.9
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 1.3e-16 92.8 99 53.5
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 1.8e-16 92.4 759 26.7
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 4.3e-15 87.8 777 24.6
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 1.6e-14 85.9 823 23.1
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 4.8e-14 84.3 192 34.4
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 3.1e-13 81.6 258 31.8
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 1.2e-12 79.7 150 38.0
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 3.4e-12 78.2 96 47.9
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.2e-11 75.5 89 42.7
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 3.8e-11 74.7 87 43.7
QL05p044176 Quercus lobata HOM05D007489 ORTHO05D008037 2.3e-08 65.5 162 37.7
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 5.1e-08 64.3 65 55.4
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 2.5e-07 62.0 60 51.7
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 3.3e-07 61.6 60 51.7


User provided reference genes

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