Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 3.1e-251 871.3 443 100.0
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.3e-217 758.8 452 86.7
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 6.6e-217 757.3 452 86.9
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 9.6e-216 753.4 452 86.5
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 3.6e-215 751.5 461 86.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 3.1e-198 695.3 395 90.4
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.7e-196 689.5 452 80.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 5.7e-184 647.9 456 76.8
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.8e-183 645.6 457 75.9
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 3.1e-182 642.1 391 84.1
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 9.0e-182 640.6 403 82.6
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 2.6e-181 639.0 457 75.3
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 7.7e-181 637.5 393 82.7
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.7e-180 636.3 445 76.6
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 3.8e-180 635.2 387 84.8
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 9.4e-179 630.6 459 74.5
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.2e-178 630.2 362 88.1
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.1e-178 629.4 358 89.4
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 4.6e-178 628.2 373 86.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.0e-177 627.1 387 83.7
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.0e-177 627.1 469 73.3
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.4e-177 626.7 387 84.0
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.4e-177 626.7 376 85.6
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.8e-177 626.3 433 76.2
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 3.0e-177 625.5 381 83.2
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 8.8e-177 624.0 426 77.5
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 3.3e-176 622.1 460 73.0
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 7.4e-176 620.9 417 77.5
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.3e-175 620.2 365 86.0
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.7e-175 619.8 457 72.9
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.7e-175 619.8 363 86.0
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 6.3e-175 617.8 382 81.9
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.8e-174 616.3 368 84.8
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.8e-174 616.3 368 84.8
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.8e-174 616.3 369 84.6
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 6.9e-174 614.4 395 80.8
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.9e-174 614.4 395 80.8
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 9.1e-174 614.0 440 73.6
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.2e-173 613.6 459 73.0
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.2e-173 613.6 459 73.0
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.5e-173 611.7 395 80.3
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.3e-172 610.1 469 71.9
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.7e-172 609.8 379 83.4
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.9e-172 609.0 364 83.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 5.0e-172 608.2 359 85.5
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 5.0e-172 608.2 359 85.5
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 5.0e-172 608.2 363 84.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 6.5e-172 607.8 370 82.2
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 6.5e-172 607.8 370 84.3
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.4e-171 606.7 361 85.0
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.9e-171 606.3 473 70.2
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.5e-171 605.9 365 84.1
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.5e-171 605.9 372 81.5
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 4.2e-171 605.1 360 85.0
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 5.5e-171 604.7 363 84.0
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 7.2e-171 604.4 365 84.9
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 7.2e-171 604.4 383 81.2
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.6e-170 603.2 367 83.7
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.0e-169 600.5 367 83.1
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.8e-169 599.7 399 78.4
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 3.0e-169 599.0 462 69.9
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 3.0e-169 599.0 362 83.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 4.4e-168 595.1 408 76.5
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 4.4e-168 595.1 391 77.2
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 5.7e-168 594.7 456 71.3
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 7.4e-168 594.3 459 70.6
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 9.7e-168 594.0 456 71.3
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.7e-167 593.2 344 86.9
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.8e-167 591.7 344 87.8
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 6.3e-167 591.3 366 82.2
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 6.3e-167 591.3 358 84.1
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 8.2e-167 590.9 373 83.1
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.8e-166 589.7 358 83.8
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 4.1e-166 588.6 358 83.5
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 4.5e-165 585.1 390 80.3
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 4.5e-165 585.1 362 82.3
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.3e-164 583.6 442 70.1
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.9e-164 582.4 340 86.8
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 6.5e-164 581.3 350 85.1
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.1e-163 580.5 351 83.5
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.1e-163 580.5 351 83.5
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.2e-163 578.9 364 81.0
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 5.5e-163 578.2 364 81.0
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 9.4e-163 577.4 362 81.5
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.2e-162 577.0 380 79.5
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.4e-161 573.5 362 80.7
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 3.0e-161 572.4 357 81.8
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.4e-160 568.5 418 73.7
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 8.2e-159 564.3 468 66.0
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 8.2e-159 564.3 364 78.8
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.4e-158 562.8 471 65.0
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 7.0e-158 561.2 375 78.4
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.2e-157 560.5 337 84.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.6e-157 559.3 342 83.3
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.3e-156 557.0 339 85.0
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 8.3e-151 537.7 469 66.7
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 8.5e-148 527.7 425 67.5
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.6e-146 523.5 309 86.4
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 6.1e-146 521.5 328 82.6
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.5e-144 516.9 322 82.0
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.0e-144 516.5 361 72.9
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.6e-144 516.2 366 75.1
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.8e-143 512.7 297 87.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 9.5e-139 497.7 361 70.4
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.0e-138 494.6 353 71.1
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 9.8e-136 487.6 312 77.2
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.7e-135 486.9 339 71.7
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 8.3e-135 484.6 338 72.2
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.4e-134 483.0 286 85.3
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.0e-134 481.5 329 73.3
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.9e-133 478.4 399 66.2
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 6.1e-130 468.4 339 69.6
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 6.4e-127 458.4 275 84.4
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 4.3e-123 445.7 258 88.4
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 4.4e-120 435.6 353 67.4
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 7.5e-120 434.9 252 85.7
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.8e-113 413.7 260 81.2
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 9.2e-110 401.4 251 81.3
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 1.5e-99 367.5 401 55.6
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 6.2e-98 362.1 285 70.5
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.1e-91 341.3 211 82.9
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-73 281.6 184 80.4
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 5.8e-72 275.8 338 45.9
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.7e-71 274.2 335 46.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.6e-69 267.7 351 49.9
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.1e-60 236.1 132 85.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.5e-56 223.0 143 79.7
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.5e-54 217.2 334 36.5
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.0e-52 211.8 124 84.7
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.2e-48 198.4 380 37.1
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.0e-44 185.3 107 84.1
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.2e-38 162.5 109 78.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.0e-36 157.1 90 84.4
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.2e-32 145.2 83 86.7
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.9e-30 137.9 131 60.3
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.3e-28 131.0 79 82.3
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-28 131.0 79 82.3
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.3e-28 131.0 79 82.3
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 4.0e-28 130.2 103 68.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 5.2e-28 129.8 101 65.3
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.0e-27 127.9 78 78.2
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 9.8e-27 125.6 79 78.5
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 9.8e-27 125.6 79 78.5
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 3.7e-26 123.6 79 77.2
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.1e-25 120.2 66 87.9
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.9e-23 114.0 74 78.4
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 3.0e-20 104.0 64 81.2
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 1.4e-17 95.1 187 33.7
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.7e-15 88.2 86 57.0
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 8.6e-15 85.9 54 83.3
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.0e-12 79.0 44 86.4
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 3.7e-10 70.5 69 53.6
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.1e-09 67.0 39 79.5
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 5.4e-09 66.6 36 88.9
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 2.7e-08 64.3 58 55.2
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 1.0e-07 62.4 37 75.7


User provided reference genes

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