Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 3.8e-216 754.6 390 100.0
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 3.7e-131 472.2 390 71.5
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 7.6e-124 448.0 367 70.3
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 3.3e-71 273.1 373 50.9
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 4.8e-70 269.2 373 52.0
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.1e-69 266.2 373 51.2
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.6e-52 211.1 259 54.8
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 4.9e-38 162.9 432 36.1
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.3e-35 154.1 444 33.8
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 7.3e-34 149.1 422 32.7
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 6.2e-33 146.0 435 34.0
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 8.0e-33 145.6 443 33.4
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.4e-32 144.8 448 33.7
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.8e-32 144.4 413 31.5
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 5.2e-32 142.9 450 34.0
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.2e-31 141.7 457 32.6
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 4.9e-30 136.3 403 33.7
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.1e-29 135.2 393 33.8
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 3.2e-29 133.7 457 31.1
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 9.2e-29 132.1 411 34.1
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 6.0e-28 129.4 447 33.1
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 5.0e-27 126.3 414 32.1
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 5.0e-27 126.3 469 29.6
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 8.6e-27 125.6 403 32.8
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 8.6e-27 125.6 398 32.7
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.5e-26 124.8 414 32.9
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.9e-26 124.4 426 30.5
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.9e-26 124.4 419 30.5
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 2.5e-26 124.0 467 30.2
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 4.3e-26 123.2 404 31.7
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 7.3e-26 122.5 402 32.6
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 9.5e-26 122.1 419 31.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 2.8e-25 120.6 427 32.1
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 6.2e-25 119.4 347 34.3
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 8.1e-25 119.0 407 32.4
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.1e-24 118.6 427 31.6
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.8e-24 117.9 407 32.2
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 3.1e-24 117.1 406 31.5
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 8.9e-24 115.5 404 31.4
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 8.9e-24 115.5 404 31.4
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.2e-23 115.2 433 30.3
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-23 115.2 403 30.8
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 1.5e-23 114.8 439 31.9
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-23 114.4 399 30.8
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.0e-23 114.4 437 31.4
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 4.4e-23 113.2 396 33.1
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 7.5e-23 112.5 415 30.4
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 9.8e-23 112.1 417 31.9
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 1.7e-22 111.3 453 31.8
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 4.9e-22 109.8 403 30.3
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 4.9e-22 109.8 376 31.9
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 6.4e-22 109.4 427 30.2
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 8.3e-22 109.0 428 31.1
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 8.3e-22 109.0 410 28.8
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.1e-21 108.6 332 31.6
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.1e-21 108.6 386 31.1
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.4e-21 108.2 412 31.6
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.4e-21 108.2 447 31.1
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 4.1e-21 106.7 446 28.5
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.1e-21 106.7 429 31.7
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 5.4e-21 106.3 368 32.1
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 7.1e-21 105.9 450 28.9
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 7.1e-21 105.9 435 30.1
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 9.2e-21 105.5 413 31.7
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.2e-20 105.1 432 30.8
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.1e-20 104.4 474 29.1
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.7e-20 104.0 434 28.1
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.5e-20 103.6 435 29.4
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 4.6e-20 103.2 429 32.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 6.0e-20 102.8 253 33.6
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 7.8e-20 102.4 407 30.7
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.0e-19 102.1 415 29.4
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.0e-19 102.1 387 32.0
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.3e-19 101.7 396 31.1
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.7e-19 101.3 474 27.8
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.0e-19 100.5 427 29.7
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 3.0e-19 100.5 412 31.8
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.9e-19 100.1 381 30.2
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 3.9e-19 100.1 389 31.6
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 5.1e-19 99.8 408 29.2
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 8.6e-19 99.0 388 28.9
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 4.3e-18 96.7 450 30.0
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 5.6e-18 96.3 164 44.5
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 7.3e-18 95.9 173 42.8
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.2e-17 95.1 336 30.4
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-17 94.7 416 30.8
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.1e-17 94.4 294 31.6
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 4.7e-17 93.2 370 29.7
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 6.2e-17 92.8 385 29.6
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 6.2e-17 92.8 246 32.5
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 6.2e-17 92.8 313 32.6
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-16 92.0 173 42.2
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-16 92.0 173 42.2
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 1.1e-16 92.0 428 31.8
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-16 91.7 163 39.9
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 5.2e-16 89.7 383 30.0
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 5.2e-16 89.7 383 30.0
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 5.2e-16 89.7 448 27.5
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 6.8e-16 89.4 407 28.0
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.2e-15 88.6 177 40.1
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-15 88.6 155 40.6
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.2e-15 88.6 409 29.1
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 3.4e-15 87.0 162 38.3
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 3.4e-15 87.0 402 30.6
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.4e-15 86.7 438 28.1
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 5.8e-15 86.3 162 38.3
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 5.8e-15 86.3 371 30.2
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 7.6e-15 85.9 418 30.4
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 7.6e-15 85.9 416 28.8
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 7.6e-15 85.9 345 30.4
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.7e-14 84.7 158 39.2
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.7e-14 84.7 173 37.0
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 1.7e-14 84.7 347 29.4
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.2e-14 84.3 389 24.7
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 4.9e-14 83.2 55 74.5
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 4.9e-14 83.2 84 58.3
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 8.4e-14 82.4 182 36.3
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 8.4e-14 82.4 375 29.1
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 8.4e-14 82.4 370 29.2
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.1e-13 82.0 162 37.7
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.9e-13 81.3 113 46.9
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.9e-13 81.3 398 29.4
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.2e-13 80.5 321 31.2
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 7.1e-13 79.3 160 36.2
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 9.2e-13 79.0 164 35.4
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 9.2e-13 79.0 399 28.6
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.2e-12 78.6 161 37.9
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.6e-12 78.2 388 30.4
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.1e-12 77.8 91 51.6
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-12 77.8 158 39.2
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 2.7e-12 77.4 418 27.8
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-12 76.3 164 37.2
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-12 76.3 166 36.7
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 6.0e-12 76.3 166 36.7
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 6.0e-12 76.3 166 36.7
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 7.8e-12 75.9 431 27.8
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 3.0e-11 73.9 387 26.9
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 3.0e-11 73.9 144 37.5
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.9e-11 73.6 173 37.6
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.9e-11 73.6 173 37.0
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 3.9e-11 73.6 63 58.7
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 6.6e-11 72.8 370 27.0
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.1e-10 72.0 64 60.9
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 4.3e-10 70.1 159 36.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 5.6e-10 69.7 422 27.0
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 2.8e-09 67.4 166 38.0
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 2.8e-09 67.4 61 55.7
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 3.6e-09 67.0 360 27.5
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 8.1e-09 65.9 136 39.7
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.4e-08 65.1 395 26.8
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 1.8e-08 64.7 152 36.2
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 3.1e-08 63.9 382 24.3
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 5.2e-08 63.2 328 29.3
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 4.4e-07 60.1 370 25.7
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 7.6e-07 59.3 432 26.2
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 1.3e-06 58.5 74 47.3
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 1.7e-06 58.2 53 58.5


User provided reference genes

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