Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 2.9e-176 622.1 386 100.0
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 6.1e-142 508.1 386 78.8
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 8.0e-126 454.5 389 74.8
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 1.4e-122 443.7 399 71.9
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.9e-107 392.9 389 65.3
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.5e-100 370.5 390 64.4
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.5e-100 370.5 390 62.6
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.9e-100 367.9 394 63.5
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.1e-97 360.1 394 62.7
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.7e-94 349.0 394 61.7
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.4e-74 283.5 384 54.4
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 6.0e-73 278.9 401 50.6
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.9e-71 273.9 384 56.5
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.5e-71 273.5 384 56.5
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 9.3e-66 255.0 371 52.3
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.5e-65 253.1 352 50.6
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.8e-64 250.8 352 51.4
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 3.0e-64 250.0 364 47.5
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.7e-64 248.4 352 50.0
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.1e-61 240.0 377 47.7
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.0e-60 237.3 390 51.0
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 4.5e-60 236.1 379 50.9
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 5.1e-56 222.6 403 46.4
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 5.1e-56 222.6 382 44.5
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 6.7e-56 222.2 397 45.6
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.1e-55 221.5 381 42.3
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.2e-54 217.2 375 41.9
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.2e-50 203.4 375 41.6
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.2e-49 201.4 404 43.3
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 5.3e-45 186.0 377 39.3
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 2.0e-44 184.1 311 41.5
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 2.0e-44 184.1 311 41.5
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.3e-43 181.4 394 43.7
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 8.5e-43 178.7 369 45.5
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.5e-42 177.2 394 43.4
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 6.1e-41 172.6 378 40.5
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.4e-40 171.4 384 42.4
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.4e-40 171.4 366 42.6
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.1e-39 168.3 372 41.7
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 2.0e-39 167.5 381 42.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 4.4e-39 166.4 369 41.7
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.4e-39 166.4 359 38.2
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.7e-39 165.2 371 37.2
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.7e-38 164.5 362 44.5
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.8e-38 163.7 368 39.4
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 2.4e-37 160.6 365 44.9
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 3.1e-37 160.2 368 35.3
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 7.0e-37 159.1 376 36.2
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.5e-36 157.9 369 39.8
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 2.6e-36 157.1 361 39.1
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.7e-35 154.5 396 37.6
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.9e-35 153.7 386 38.6
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 2.9e-35 153.7 396 38.6
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.9e-35 153.7 383 34.7
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.9e-35 153.7 338 37.9
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 3.8e-35 153.3 389 38.3
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 2.7e-33 147.1 385 35.1
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 4.7e-33 146.4 389 38.8
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 6.1e-33 146.0 383 37.9
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 1.0e-32 145.2 335 49.9
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 1.0e-32 145.2 325 45.2
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.0e-32 145.2 383 37.9
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.8e-32 144.4 389 34.2
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 8.8e-32 142.1 372 37.1
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.5e-31 141.4 383 37.6
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 2.0e-31 141.0 386 37.3
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.0e-31 141.0 379 42.0
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 7.4e-31 139.0 391 36.8
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.3e-30 138.3 360 33.1
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.7e-30 137.9 390 42.6
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 6.3e-30 136.0 387 40.1
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 4.1e-29 133.3 381 36.2
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 7.0e-29 132.5 367 35.1
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.2e-28 131.7 364 36.8
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.2e-28 131.7 392 33.2
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.3e-27 128.3 391 31.7
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.7e-27 127.9 382 36.1
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.7e-27 127.9 387 36.7
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 1.7e-27 127.9 369 37.9
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 2.9e-27 127.1 388 32.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 3.8e-27 126.7 376 33.2
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 6.5e-27 125.9 372 39.0
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 8.5e-27 125.6 374 37.7
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 1.9e-26 124.4 404 36.9
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 5.5e-26 122.9 368 36.4
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 7.2e-26 122.5 214 46.7
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 2.1e-25 120.9 299 35.5
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 3.6e-25 120.2 384 30.7
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 3.6e-25 120.2 374 35.8
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 4.7e-25 119.8 377 31.6
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.8e-24 117.9 297 36.4
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 4.0e-24 116.7 394 34.3
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 8.8e-24 115.5 378 28.6
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.5e-23 114.8 384 34.9
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 1.3e-22 111.7 369 37.1
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.2e-22 110.9 380 34.7
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.2e-22 110.9 380 34.7
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.2e-22 110.9 380 34.7
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 3.7e-22 110.2 382 36.6
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 1.2e-20 105.1 406 30.0
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 2.7e-20 104.0 290 32.4
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 3.5e-20 103.6 359 34.0
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.0e-19 102.1 359 33.7
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.3e-19 101.7 275 40.7
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 6.5e-19 99.4 136 47.1
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.2e-17 95.1 382 31.4
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 3.6e-17 93.6 229 36.2
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 8.0e-17 92.4 255 32.2
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 1.0e-16 92.0 195 36.9
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 1.4e-16 91.7 213 38.0
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.3e-16 90.9 226 36.3
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.0e-16 90.5 220 36.8
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 5.2e-16 89.7 226 36.3
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.2e-15 88.6 216 34.3
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 1.5e-15 88.2 210 37.1
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.0e-15 87.8 376 37.5
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 9.8e-15 85.5 222 36.5
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 9.8e-15 85.5 308 33.8
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 1.1e-13 82.0 321 33.0
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.1e-13 82.0 359 28.4
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 1.4e-13 81.6 231 35.5
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 2.4e-13 80.9 209 36.8
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.4e-13 80.9 366 30.1
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 4.1e-13 80.1 365 29.0
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 5.4e-13 79.7 230 35.2
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 5.4e-13 79.7 230 35.2
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 1.6e-12 78.2 384 32.8
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 2.0e-12 77.8 359 27.6
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 3.5e-12 77.0 228 35.1
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 5.0e-11 73.2 390 28.2
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 8.6e-11 72.4 218 27.5
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.1e-10 72.0 212 42.0
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.1e-10 72.0 229 32.3
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 3.3e-10 70.5 243 35.8
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 4.2e-10 70.1 243 38.7
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 2.8e-09 67.4 402 24.4
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 6.8e-08 62.8 226 31.9
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 2.6e-07 60.8 384 27.9
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.4e-07 60.1 108 43.5


User provided reference genes

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