Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 2.7e-98 362.1 196 100.0
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 6.1e-90 334.3 196 92.3
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.3e-87 326.6 196 89.3
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 8.3e-87 323.9 196 87.8
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 4.1e-86 321.6 196 87.2
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 7.0e-86 320.9 196 87.8
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.0e-86 320.9 196 88.8
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 4.5e-85 318.2 196 87.2
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.0e-84 317.0 196 87.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.0e-84 317.0 196 87.2
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.0e-84 317.0 196 86.2
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 85.2
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 86.2
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.3e-84 315.8 196 85.7
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 2.3e-84 315.8 196 85.2
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 2.3e-84 315.8 196 86.2
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.8e-84 315.1 196 85.2
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 5.0e-84 314.7 196 83.7
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 5.0e-84 314.7 196 85.7
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 5.0e-84 314.7 196 87.2
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.0e-84 314.7 196 86.7
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 8.6e-84 313.9 196 86.2
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.1e-83 313.5 196 85.7
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.5e-83 312.4 196 86.7
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 2.5e-83 312.4 196 84.7
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 2.5e-83 312.4 196 85.7
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.5e-83 312.4 196 82.7
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.5e-83 312.4 196 86.2
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.3e-83 311.6 196 85.2
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 4.3e-83 311.6 196 86.2
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.3e-83 311.6 196 85.7
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 7.3e-83 310.8 196 85.7
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 9.5e-83 310.5 196 85.2
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 9.5e-83 310.5 196 84.7
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.2e-82 310.1 196 84.2
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 1.6e-82 309.7 196 81.1
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 2.1e-82 309.3 196 84.2
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 2.1e-82 309.3 196 82.7
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 3.6e-82 308.5 196 83.7
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 6.1e-82 307.8 196 83.7
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 6.1e-82 307.8 196 83.2
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 6.1e-82 307.8 195 84.1
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.0e-81 307.0 196 83.7
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 5.2e-81 304.7 196 82.1
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 6.8e-81 304.3 196 83.2
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 6.8e-81 304.3 196 83.7
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 8.9e-81 303.9 196 82.1
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.2e-80 303.5 196 81.6
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 2.0e-80 302.8 196 82.1
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.0e-80 302.8 196 83.2
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.6e-80 302.4 196 82.1
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.6e-80 302.4 196 82.1
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 3.4e-80 302.0 196 81.6
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 3.4e-80 302.0 196 83.2
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 5.8e-80 301.2 196 82.1
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 7.5e-80 300.8 196 81.6
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 9.8e-80 300.4 196 80.6
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.3e-79 300.1 196 82.1
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 4.9e-79 298.1 196 81.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 4.9e-79 298.1 196 82.7
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 4.9e-79 298.1 196 79.6
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 8.3e-79 297.4 196 81.6
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 8.3e-79 297.4 196 81.6
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.9e-78 296.2 196 81.1
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 4.1e-78 295.0 196 79.6
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 9.2e-78 293.9 196 80.6
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.2e-77 293.5 197 81.2
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.2e-77 293.5 175 89.7
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 1.6e-77 293.1 175 90.3
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.6e-77 293.1 196 79.6
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 2.0e-77 292.7 196 79.1
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 3.5e-77 292.0 237 70.5
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 3.5e-77 292.0 197 80.2
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 4.6e-77 291.6 197 80.2
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 6.0e-77 291.2 196 79.6
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 6.0e-77 291.2 196 79.1
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 2.3e-76 289.3 197 80.7
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.0e-76 288.9 181 85.6
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 3.9e-76 288.5 197 79.7
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 5.0e-76 288.1 196 79.1
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 6.6e-76 287.7 196 79.1
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 8.6e-76 287.3 175 87.4
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.5e-75 286.6 196 77.0
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 4.3e-75 285.0 196 78.1
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.2e-74 283.5 196 78.1
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 3.6e-74 282.0 196 77.0
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.6e-74 282.0 196 78.1
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 6.2e-74 281.2 197 79.2
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.8e-73 279.6 196 75.5
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 2.3e-73 279.3 196 76.5
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 2.3e-73 279.3 196 75.5
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 5.2e-73 278.1 196 75.0
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 5.2e-73 278.1 196 75.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 6.8e-73 277.7 196 75.0
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.5e-72 276.6 196 74.5
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.6e-72 275.8 196 74.0
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 3.4e-72 275.4 196 75.0
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 3.4e-72 275.4 197 77.7
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 4.4e-72 275.0 197 76.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 4.4e-72 275.0 196 75.0
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.3e-71 273.5 211 71.6
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.7e-71 273.1 211 71.6
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.7e-71 273.1 196 73.5
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.7e-71 273.1 196 73.5
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 2.2e-71 272.7 248 63.7
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 3.7e-71 271.9 195 72.3
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.7e-71 271.9 196 71.9
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 3.7e-71 271.9 196 72.4
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 3.7e-71 271.9 196 74.0
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 8.3e-71 270.8 196 71.9
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.1e-70 270.4 196 72.4
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.1e-70 270.4 196 71.9
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.1e-70 270.4 196 72.4
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.1e-70 270.4 196 71.9
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 2.4e-70 269.2 196 71.9
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 2.4e-70 269.2 196 71.9
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.4e-70 269.2 196 71.9
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 2.4e-70 269.2 196 71.9
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 2.4e-70 269.2 196 71.9
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 7.0e-70 267.7 196 71.4
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 7.0e-70 267.7 196 70.9
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 9.2e-70 267.3 196 71.9
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.1e-69 266.2 196 70.4
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 6.0e-69 264.6 178 80.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 7.8e-69 264.2 175 80.6
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 3.9e-68 261.9 196 69.9
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 5.0e-68 261.5 245 62.0
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 6.6e-68 261.2 196 69.4
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.2e-64 250.4 188 70.2
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.5e-59 233.4 196 68.9
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 2.4e-57 226.1 197 66.5
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 6.8e-57 224.6 155 76.8
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.4e-55 218.0 134 85.1
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.1e-54 214.5 175 70.3
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.5e-53 212.2 134 82.1
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 5.3e-49 198.4 155 68.4
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 4.9e-47 191.8 178 62.9
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.2e-39 166.4 149 63.8
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.9e-38 163.3 112 75.9
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 4.8e-34 148.7 196 44.4
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.1e-27 127.5 196 37.8
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.5e-27 127.1 183 48.6
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.5e-27 127.1 156 51.9
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 3.3e-27 125.9 85 76.5
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.3e-26 124.0 134 57.5
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.1e-26 123.2 236 41.9
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 3.7e-26 122.5 196 38.3
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 3.5e-21 105.9 176 36.9
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 3.5e-21 105.9 196 34.7
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 4.8e-18 95.5 63 81.0
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 7.2e-14 81.6 156 43.6
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 9.4e-14 81.3 64 68.8
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.4e-12 77.4 48 81.2
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 8.8e-12 74.7 52 69.2
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.5e-11 73.9 64 65.6
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 3.1e-09 66.2 194 30.9
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 5.0e-07 58.9 50 66.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 8.5e-07 58.2 40 80.0


User provided reference genes

Program Settings