Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1998.8 984 100.0
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1633.2 987 83.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1606.7 984 81.7
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1596.3 984 81.4
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1533.5 987 79.4
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1525.8 987 78.9
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1404.4 919 78.0
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1372.8 988 71.6
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1365.1 988 71.1
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1357.8 987 71.8
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1345.1 980 70.7
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1327.4 982 70.4
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1324.3 993 68.0
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1313.5 896 75.4
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1313.1 1008 69.5
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1304.7 995 68.6
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1296.6 989 67.2
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1291.6 978 68.8
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1291.6 999 67.9
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1290.4 1002 66.8
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1286.2 996 66.3
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1276.9 990 66.2
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1271.9 988 67.4
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1261.1 995 65.8
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1260.4 998 65.7
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1258.8 986 66.9
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1258.0 974 67.2
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1257.3 1006 65.2
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1256.1 991 66.6
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1255.4 966 66.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1254.6 998 66.5
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1252.3 984 66.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1245.7 976 65.9
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1243.0 1002 65.2
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1239.2 986 65.9
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1237.6 985 64.7
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 1042 64.0
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1231.9 1086 62.7
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 1000 64.7
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1226.1 1084 60.3
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1218.4 997 63.6
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1217.6 986 64.6
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1216.4 986 64.9
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1214.9 993 64.8
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1214.5 975 65.0
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1214.5 1017 64.0
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1212.2 987 63.1
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1208.4 991 64.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1198.7 977 63.1
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1197.6 983 63.2
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1196.8 979 64.1
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1191.8 980 62.6
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1191.4 994 64.5
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 1056 60.0
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 973 62.5
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1189.1 982 62.2
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1187.9 981 64.4
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1187.2 982 62.2
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1184.1 978 61.8
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1183.7 984 62.4
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1182.9 686 85.7
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1182.2 994 64.1
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1181.0 984 62.3
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1179.1 1056 59.8
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1178.7 1056 59.8
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1172.5 988 61.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1170.6 988 61.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1170.2 984 62.1
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1167.1 947 63.9
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1166.4 988 61.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1166.4 988 61.4
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1163.7 986 61.1
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1163.3 1010 60.7
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 980 61.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1158.7 985 63.4
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1157.9 1043 59.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1157.1 981 61.1
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1154.8 870 69.2
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 1124 57.5
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 980 60.5
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 980 60.5
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1144.0 974 60.9
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 975 60.8
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1142.5 1034 59.6
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 973 62.8
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 983 62.0
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1139.8 1013 60.6
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1138.6 1014 60.3
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 1025 58.7
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 970 60.1
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1115.9 992 59.5
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 1101 54.8
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1103.2 971 60.6
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 1000 57.8
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1100.1 954 60.8
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 996 60.2
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1094.0 986 58.7
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 0.0e+00 1081.6 902 63.5
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 984 57.5
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1076.2 991 58.9
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.7e-311 1072.0 968 58.3
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.8e-308 1062.0 967 60.2
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.6e-306 1055.4 920 60.3
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 3.8e-305 1051.6 974 56.7
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 7.9e-303 1043.9 1223 49.9
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.6e-301 1037.7 987 56.4
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.4e-299 1033.1 1008 55.9
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.0e-295 1017.7 1025 54.8
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.0e-294 1016.9 1095 52.4
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.3e-294 1015.8 1009 55.2
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 7.4e-293 1010.7 801 64.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.1e-292 1009.2 991 55.8
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.5e-282 976.5 777 65.5
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-262 910.2 803 58.8
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.3e-257 893.6 998 51.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.8e-257 892.1 963 51.0
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.0e-250 869.8 971 49.4
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.2e-245 854.0 923 49.4
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 3.1e-243 845.9 887 51.0
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.3e-236 821.2 1112 42.4
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 5.8e-221 771.9 767 55.0
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 3.9e-217 759.2 981 46.1
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-210 737.6 626 61.5
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.8e-204 716.1 671 58.4
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 7.3e-200 701.8 763 53.6
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.8e-199 699.1 512 71.5
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.1e-192 677.9 416 79.1
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.9e-164 583.6 361 78.9
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.9e-164 583.6 407 72.5
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-157 561.2 475 65.7
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 9.4e-155 552.0 398 71.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.9e-148 530.4 714 46.2
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 2.7e-141 507.3 666 46.7
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.4e-126 457.6 292 75.3
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.7e-125 454.1 314 69.7
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.3e-121 441.0 606 44.7
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 3.5e-117 427.2 288 70.5
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.3e-108 398.7 369 56.4
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.2e-102 377.5 326 57.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-100 372.1 224 80.8
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 3.4e-56 224.6 162 69.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.2e-55 221.9 130 83.1
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 4.5e-48 197.6 137 71.5
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.7e-47 195.7 187 54.5
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.2e-45 189.5 261 43.3
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.4e-38 166.0 123 62.6
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.8e-33 149.1 111 66.7
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-32 145.6 109 65.1
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.5e-32 144.8 285 41.4
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.7e-29 135.2 76 84.2
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.8e-26 124.4 88 63.6
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.8e-20 105.9 67 76.1
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.4e-19 101.3 62 82.3
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.1e-17 96.7 279 31.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.0e-15 90.1 52 76.9
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 2.9e-15 88.6 160 36.2
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.8e-13 82.0 82 54.9
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.9e-10 71.2 66 45.5
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 9.2e-09 67.0 68 48.5
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.6e-08 66.2 62 54.8
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.0e-08 65.9 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.0e-08 65.9 53 56.6
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.5e-08 65.1 42 64.3
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 7.8e-08 63.9 53 56.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.0e-07 63.5 72 51.4
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.7e-07 62.8 35 71.4
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.1e-06 60.1 52 59.6
VMungo0251G2090 Vigna mungo HOM05D003461 ORTHO05D006812 2.5e-06 58.9 62 46.8


User provided reference genes

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