Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 6.4e-102 374.0 181 100.0
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 2.2e-89 332.4 203 81.3
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.2e-87 326.6 203 79.3
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.0e-86 323.6 203 79.3
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.9e-86 322.0 203 79.3
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.8e-86 321.6 203 78.8
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 8.5e-86 320.5 202 79.2
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 6.3e-81 304.3 203 73.9
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.4e-80 303.1 201 75.6
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.6e-79 298.9 203 72.9
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 1.7e-78 296.2 205 73.2
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 8.5e-78 293.9 201 73.1
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 1.1e-77 293.5 201 73.1
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.4e-77 293.1 201 72.6
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.4e-77 293.1 201 72.6
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.4e-77 293.1 203 72.4
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 2.5e-77 292.4 204 73.0
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 3.2e-77 292.0 205 70.2
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 3.2e-77 292.0 203 71.4
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 5.5e-77 291.2 203 71.9
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 7.2e-77 290.8 203 71.9
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 1.2e-76 290.0 203 70.9
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 1.2e-76 290.0 207 71.0
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.6e-76 289.7 205 71.7
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 1.6e-76 289.7 203 70.4
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 6.1e-76 287.7 206 71.4
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 6.1e-76 287.7 201 71.1
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.0e-75 287.0 201 72.1
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.8e-75 286.2 202 71.8
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 2.3e-75 285.8 203 71.4
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.0e-75 285.4 203 69.0
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 3.9e-75 285.0 207 70.5
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 3.9e-75 285.0 201 71.6
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 6.7e-75 284.3 198 72.2
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 6.7e-75 284.3 198 72.2
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 6.7e-75 284.3 203 69.5
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 6.7e-75 284.3 205 69.8
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 8.8e-75 283.9 206 70.4
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 1.1e-74 283.5 202 71.3
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.1e-74 283.5 198 70.7
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 1.1e-74 283.5 203 70.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 2.0e-74 282.7 200 72.0
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 2.6e-74 282.3 203 70.4
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 2.6e-74 282.3 206 69.4
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 3.3e-74 282.0 206 69.4
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 3.3e-74 282.0 200 72.0
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 3.3e-74 282.0 206 68.4
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 3.3e-74 282.0 203 70.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.3e-73 280.0 199 69.3
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.3e-73 280.0 195 71.3
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.7e-73 279.6 202 69.3
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.7e-73 279.6 198 69.7
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 1.7e-73 279.6 200 71.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 1.7e-73 279.6 201 69.7
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 4.8e-73 278.1 210 68.1
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 4.8e-73 278.1 200 71.0
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 4.8e-73 278.1 201 67.7
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 6.3e-73 277.7 198 70.2
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 6.3e-73 277.7 201 69.7
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 8.2e-73 277.3 201 69.7
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.4e-72 276.6 206 68.4
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 1.4e-72 276.6 208 67.3
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.8e-72 276.2 208 68.3
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 2.4e-72 275.8 202 68.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.4e-72 275.8 205 67.3
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 2.4e-72 275.8 200 69.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 3.1e-72 275.4 200 69.5
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 4.1e-72 275.0 200 69.0
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 7.0e-72 274.2 204 69.6
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 9.1e-72 273.9 204 68.6
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 9.1e-72 273.9 202 69.3
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.2e-71 273.5 215 66.0
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.2e-71 273.5 203 68.0
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.5e-71 273.1 208 66.8
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.6e-71 272.3 200 69.0
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 7.7e-71 270.8 197 69.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.7e-70 269.6 198 68.7
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.9e-70 268.9 204 67.6
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 3.8e-70 268.5 197 69.0
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.1e-69 266.9 197 68.5
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.4e-69 266.5 203 66.5
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.9e-69 266.2 207 66.2
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 2.5e-69 265.8 199 66.8
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 5.5e-69 264.6 227 60.4
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 1.6e-68 263.1 198 67.2
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.6e-68 263.1 199 68.3
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.7e-68 262.3 205 66.8
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.7e-68 262.3 205 66.8
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.7e-68 262.3 197 68.0
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 4.7e-68 261.5 203 66.5
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 4.7e-68 261.5 198 67.2
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 6.1e-68 261.2 200 65.0
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.9e-67 258.5 199 66.8
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 5.2e-67 258.1 199 67.3
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 1.5e-66 256.5 198 65.7
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 2.6e-66 255.8 193 64.8
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.3e-65 253.4 199 66.3
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.3e-65 253.4 199 66.3
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.7e-65 253.1 199 66.3
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 5.0e-62 241.5 183 68.3
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 4.0e-59 231.9 171 67.8
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 1.3e-54 216.9 198 56.6
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 3.8e-54 215.3 197 54.8
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 2.1e-52 209.5 201 53.7
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 1.0e-51 207.2 371 37.7
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 7.5e-50 201.1 159 65.4
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 8.3e-49 197.6 200 52.5
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 2.4e-48 196.1 202 49.5
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 2.7e-47 192.6 148 66.9
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.3e-46 189.5 204 51.5
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 5.0e-46 188.3 204 51.0
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.0e-43 180.6 200 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 2.6e-42 176.0 203 47.3
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 5.7e-42 174.9 108 79.6
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.2e-41 172.9 160 56.2
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 3.5e-39 165.6 144 61.1
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.8e-39 164.5 195 48.2
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.9e-38 162.5 139 64.0
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.1e-37 160.6 139 62.6
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.4e-32 143.7 95 73.7
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 3.5e-31 139.0 124 56.5
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 5.0e-30 135.2 184 46.2
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 5.0e-30 135.2 119 60.5
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 6.6e-30 134.8 119 60.5
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.5e-29 133.7 75 78.7
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.6e-26 122.9 161 46.6
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 1.6e-23 113.6 75 69.3
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 2.7e-23 112.8 75 69.3
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 3.3e-21 105.9 161 38.5
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.6e-20 103.6 75 68.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 9.9e-18 94.4 199 34.7
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.0e-14 82.8 85 52.9
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 7.3e-13 78.2 37 91.9
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 2.9e-09 66.2 38 76.3
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 3.8e-09 65.9 41 73.2
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 1.2e-07 60.8 36 77.8
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.0e-06 56.2 38 71.1


User provided reference genes

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